PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475738
Common NameARALYDRAFT_475738
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 512aa    MW: 56718.1 Da    PI: 5.5817
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475738genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.96.5e-1371525061374
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqaI 102
             lv++Ll+cAeav++ +l+la+al++++  las+++ +m+++a+yf+e+La+r++r    +y    p+++     s+    l++ f+e +P+lkf+h+taNqaI
  475738 152 LVHALLACAEAVQQTNLKLADALVKHVGLLASSQAGAMRKVATYFAEGLARRIYR----IY----PRDDV--ALSSFSDTLQIhFYESCPYLKFAHFTANQAI 244
             689****************************************************....55....33332..233333334444******************* PP

    GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaV 204
             lea++++e+vH+iD+++++GlQWpaL+qaLa Rp+gpp +R+Tg+gs    s + ++e+g++L ++A+++gv+fef+ ++ ++l+dl++e+L+++p  E++aV
  475738 245 LEAFATAEKVHVIDLGLNHGLQWPALIQALALRPNGPPDFRLTGIGS----SLTDIQEVGWKLGQLASTIGVNFEFKSIALNHLSDLKPEMLDIRPgSESVAV 343
             ***********************************************....9********************************************99***** PP

    GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
             n+v++lhrll++++s+++    +L+++ks++P++++vveqea+hn+++Fl+rf+e+l+yys+lfdsle       ++++++++ +lgr+i n+vaceg++r+e
  475738 344 NSVFELHRLLAHPGSIDK----FLSTIKSIRPNIMTVVEQEANHNGANFLDRFTESLHYYSSLFDSLEGP----PSQDRVMSELFLGRQILNLVACEGEDRVE 438
             **********99999999....*********************************************999....45556666677****************** PP

    GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
             rhetl++Wr+r+++ GFkpv+++++a+kqa++ll+ ++  dgy+vee++g+l+lgW++rpL+++SaWr
  475738 439 RHETLNQWRNRFGSRGFKPVNIGSNAYKQASMLLALYAgADGYNVEEDEGCLLLGWQTRPLIATSAWR 506
             *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011292.0E-3932101No hitNo description
PfamPF120417.5E-323295IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.401126485IPR005202Transcription factor GRAS
PfamPF035142.2E-134152506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MKREHNHRES STGEGGSSSM TTVIKEEAAG VDELLVVLGY KVRSSDMADV AHKLEQLEMV  60
LGDGISNLSD ETVHYNPSDL SGWVESMLSD LDPARNQEKP DSEYDLRAIP GSAVYPREEH  120
VTRRNKRTRI ESELSSTRSV VVLDSQETGV RLVHALLACA EAVQQTNLKL ADALVKHVGL  180
LASSQAGAMR KVATYFAEGL ARRIYRIYPR DDVALSSFSD TLQIHFYESC PYLKFAHFTA  240
NQAILEAFAT AEKVHVIDLG LNHGLQWPAL IQALALRPNG PPDFRLTGIG SSLTDIQEVG  300
WKLGQLASTI GVNFEFKSIA LNHLSDLKPE MLDIRPGSES VAVNSVFELH RLLAHPGSID  360
KFLSTIKSIR PNIMTVVEQE ANHNGANFLD RFTESLHYYS SLFDSLEGPP SQDRVMSELF  420
LGRQILNLVA CEGEDRVERH ETLNQWRNRF GSRGFKPVNI GSNAYKQASM LLALYAGADG  480
YNVEEDEGCL LLGWQTRPLI ATSAWRINLV E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6714750514378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap475738
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ1777530.0GQ177753.1 Arabidopsis thaliana ecotype Nok-3 RGL1 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891051.10.0DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLD7KTN40.0D7KTN4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__868__AT1G66350.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]