PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475292
Common NameARALYDRAFT_475292
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 319aa    MW: 37404.3 Da    PI: 8.3797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475292genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.87.8e-141813010128
     NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg 111
             +de ++ +yLk+ + + +   +++ik++d+++ +P+        + ++  f + + +++  g       +sg W+  g++k ++sk +g+  g kk+L f  +
  475292  18 EDEVIILRYLKRMIVNGDSWPDHFIKDADVFNKNPNVVF-----DAESPSFVIVKPRTEICGGTDG--CESGCWRIMGREKLIKSKkTGKILGFKKILKFCLK 113
             688899*******98888666588***********9995.....2233345555555555554444..469*************99677889*********** PP

     NAM 112 rapkgektdWvmheyrl 128
             r+p+  k +Wvm+eyrl
  475292 114 RKPREYKRSWVMEEYRL 130
             ***************98 PP
2NAM36.91.1e-1119030317128
     NAM  17 eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......kgra 113
              yL   ++++ l+      + d+y ++P +L      +++  + + +   +++t  ++ r  + gyW+   +dk ++sk+g+++g kk++ fy         +
  475292 190 SYLVTIMTSEGLNDWPSYVTNDVYCLHPLELA-D--LQDRMFHIYGTLIFSNKTCGKTDRC-NGGYWRILHRDKLIKSKSGKTIGFKKVFKFYetekerYFCD 288
             566666666665554556777**********7.3..4678889999999999999999996.78*****************************4432211234 PP

     NAM 114 pkgektdWvmheyrl 128
             ++ +k +W+++eyrl
  475292 289 EEDVKITWTIEEYRL 303
             5668*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.3589148IPR003441NAC domain
SuperFamilySSF1019413.4E-2718147IPR003441NAC domain
PfamPF023657.7E-918130IPR003441NAC domain
SuperFamilySSF1019413.4E-24159315IPR003441NAC domain
PROSITE profilePS5100518.39173318IPR003441NAC domain
PfamPF023651.2E-5234303IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDDAAFDLI KAELLNAEDE VIILRYLKRM IVNGDSWPDH FIKDADVFNK NPNVVFDAES  60
PSFVIVKPRT EICGGTDGCE SGCWRIMGRE KLIKSKKTGK ILGFKKILKF CLKRKPREYK  120
RSWVMEEYRL TNNLNWKQDH VICKIRFLFE SEISFVLAKH FYTTSESLPR NELLPAYGFL  180
SSDKQVEDIS YLVTIMTSEG LNDWPSYVTN DVYCLHPLEL ADLQDRMFHI YGTLIFSNKT  240
CGKTDRCNGG YWRILHRDKL IKSKSGKTIG FKKVFKFYET EKERYFCDEE DVKITWTIEE  300
YRLNVKQNKF VCVIKVYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap475292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017510.0HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886624.10.0uncharacterized protein LOC9322690
TrEMBLD7KXA40.0D7KXA4_ARALL; ANAC024
STRINGfgenesh2_kg.2__422__AT1G60350.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60350.10.0NAC domain containing protein 24