PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475082
Common NameARALYDRAFT_475082
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 403aa    MW: 46859.8 Da    PI: 6.8279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475082genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806.2e-5671361129
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
             +ppGfrFhPtdeelv++yL+kkv++k++e+ ++i++vd+yk+ePwdL++  k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++  +++l+
  475082   7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFINDVDLYKIEPWDLQElcKIGNEEQsEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYI-RHSLI 107
             69****************************.99**************954555554445**************************************.8899* PP

     NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
             g++ktLvfykgrap+g+k+dW+mheyrle
  475082 108 GMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
             ***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-605156IPR003441NAC domain
PROSITE profilePS5100559.5497156IPR003441NAC domain
PfamPF023651.2E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MNSFSQVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIN DVDLYKIEPW DLQELCKIGN  60
EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKKLAA TVRKMGDYNS SPSHWYDDQL  180
SFMASELDSS SPRQFLPNHY YNRHHHHHQQ TLPCGLNASS AYAFNNNNNP NLQCKQELEL  240
HYNHMVQHQQ QNHHLRESMF LQLPQLESPT SNCNSNNNNN TRNIGKLQKS SNISHEEQLQ  300
QGNQSFSTLY YDQGVEQMTT DWRVFDKFVA SQLSNEEAAA EASTSSHQNN VKIDTRNPVY  360
QVIDEGINLP ENDSERVVEM RDEYTNSHAA STSSSCQIDL WK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-51715715169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap475082
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071900.0AC007190.4 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886460.10.0NAC domain-containing protein 26
RefseqXP_020865848.10.0NAC domain-containing protein 26
SwissprotF4HYV50.0NAC26_ARATH; NAC domain-containing protein 26
TrEMBLD7KU780.0D7KU78_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__212__AT1G62700.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21112678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.10.0Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]