PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

474694

Common Name

ARALYDRAFT_474694

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 302aa MW: 34779.1 Da PI: 5.662

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
474694	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.3e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lppGfrFhPtdeelv +yL +kv+g+ +el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd+ v s k+ ++g 474694 6 LPPGFRFHPTDEELVAYYLDRKVNGRAIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRIVES-KKMKMG 106 79**************************.99**********95334455788*****************************99999.9999 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLv+y+grap+g +t+Wvmheyrl 474694 107 MKKTLVYYRGRAPHGLRTNWVMHEYRL 133 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-63	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	59.495	6	153	IPR003441	NAC domain
Pfam	PF02365	4.4E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RAIELEIIPE VDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRIVES KKMKMGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLTHAPSSS LKESYALCRV FKKNIQIPKR KGEEEEAEEE STCVGKEEEE 180 EKEKKWRKCD GNCIEDESLK RASAETSSSE LTQGILLDEA NSSSIFALHF SSSLLDDHDH 240 LFSNYSHQLP YHPPLQLQDF PQLSMNEAEI MSIQQDFQCR DSMNGTLDEI FSSSATFPAS 300 L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-56	1	154	15	169	NAC domain-containing protein 19
3swm_B	8e-56	1	154	15	169	NAC domain-containing protein 19
3swm_C	8e-56	1	154	15	169	NAC domain-containing protein 19
3swm_D	8e-56	1	154	15	169	NAC domain-containing protein 19
3swp_A	8e-56	1	154	15	169	NAC domain-containing protein 19
3swp_B	8e-56	1	154	15	169	NAC domain-containing protein 19
3swp_C	8e-56	1	154	15	169	NAC domain-containing protein 19
3swp_D	8e-56	1	154	15	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	474694

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176278	0.0	AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002894566.1	0.0	NAC domain-containing protein 86
Swissprot	Q9FFI5	4e-81	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	D7KNX4	0.0	D7KNX4_ARALL; ANAC020
STRING	fgenesh2_kg.1__4648__AT1G54330.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	0.0	NAC domain containing protein 20

Link Out ? help Back to Top
Phytozome	474694
Entrez Gene	9330627

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]