![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
474535 |
Common Name | ARALYDRAFT_474535 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
Trihelix |
Protein Properties |
Length: 369aa MW: 40358.2 Da PI: 9.7506 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
474535 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Aly&pid=474535) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 53 | 8.8e-17 | 90 | 176 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Li+a ++ ++ ++g lk+++W+ev++ + r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++le
474535 90 CWSEEATKVLIDAWGDRFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSKWVFFKKLE 176
7*************************************99999999**************************98..56668******98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009733 | Biological Process | response to auxin |
GO:0009793 | Biological Process | embryo development ending in seed dormancy |
GO:0010029 | Biological Process | regulation of seed germination |
GO:0010431 | Biological Process | seed maturation |
GO:0048831 | Biological Process | regulation of shoot system development |
GO:0005730 | Cellular Component | nucleolus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 369 aa
Download sequence Send
to blast |
MEDDDEIQSI PSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPQTLVSSQS PSRNALALVV 60 HTPSVTGGGS GNTRNGRGGS GGGGGGRDDC WSEEATKVLI DAWGDRFSEP GKGTLKQQHW 120 KEVAEIVNKS RQCKYPKTDI QCKNRIDTVK KKYKQEKAKI ASGDGPSKWV FFKKLESLIG 180 GTTTVVASSK ASEKAPMGGG LRSNIYKRQA KGNQIVQGGD LKRSSNSMRW HFRKRSASET 240 ESESDPEPEA SPDSAESLPP LQPPQPLSFH LPKRLKVDKS GDGGSGVGDV ARAILGFTEA 300 YEKAETAKLK LMAQLEKERM KFAKEMELQR MQFLKTQLEI TQNNQEEEER SRQRGERRIA 360 DDDDRNGKN
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Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Aly&pid=474535) |
No. |
Start |
End |
Sequence |
1 | 76 | 86 | RGGSGGGGGGR |
2 | 221 | 234 | KRSSNSMRWHFRKR |
Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF360325 | 0.0 | AF360325.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
GenBank | AY056333 | 0.0 | AY056333.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
GenBank | AY084772 | 0.0 | AY084772.1 Arabidopsis thaliana clone 117519 mRNA, complete sequence. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | F15I1 | 0.0 | AC006577.2 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence. |