PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 474412 | ||||||||
Common Name | ARALYDRAFT_474412 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 35681.8 Da PI: 8.1557 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.5 | 2.2e-52 | 17 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelv 100 lp+GfrFhPtdeelv +yLk+k+++ +l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ ++++v 474412 17 LPQGFRFHPTDEELVIHYLKRKADSVPLPV-AIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISTgggGNKKV 118 799***************************.88***************999999****************************************99988889* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy+g+ pkg+k+dW+mheyrl 474412 119 GVKKALVFYSGKPPKGVKSDWIMHEYRL 146 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-64 | 12 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.953 | 17 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-27 | 18 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MESTDSSGDP PPPQPNLPQG FRFHPTDEEL VIHYLKRKAD SVPLPVAIIA DVDLYKFDPW 60 ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVIST GGGGNKKVGV 120 KKALVFYSGK PPKGVKSDWI MHEYRLTDNK PTHICDFGNK KNSLRLDDWV LCRIYQKNNS 180 TTSRHHHHHH LHLDNNDHHR HDMMIDDERF RHVPHGLHFP AIFSDNNDPT AIYDGGGGGY 240 GGGNYSMNHN FASGSKQEQL FPPVMMMTSI NQDSGIGSSS SPSKRFNGGG LGDCSTSLAA 300 TPLMQNQGGI YQLSGLNWYT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-72 | 16 | 180 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00201 | DAP | Transfer from AT1G52880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 474412 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF123311 | 0.0 | AF123311.1 Arabidopsis thaliana NAC domain protein NAM mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868052.1 | 0.0 | NAC domain-containing protein 18 | ||||
Swissprot | Q9ZNU2 | 0.0 | NAC18_ARATH; NAC domain-containing protein 18 | ||||
TrEMBL | D7KJL9 | 0.0 | D7KJL9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__4366__AT1G52880.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52880.1 | 1e-178 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 474412 |
Entrez Gene | 9330468 |