PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474224
Common NameARALYDRAFT_474224
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 227aa    MW: 25438.8 Da    PI: 7.1438
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474224genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-1170116453
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
             ++  rE++RRdr+N++f eL ++l +    +++K +K++i   A++ +++
  474224  70 SKACREKQRRDRLNDKFTELSSILEPG---RAPKTDKVAIINDAIRMVNQ 116
             5678**********************9...9**************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.44966117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-970116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-1270136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.13E-870122No hitNo description
Gene3DG3DSA:4.10.280.109.4E-1271139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-772123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVSPENTNWL SDYPLIDGAF SDQNPTFPWQ IDASATVSVE VDGFLCDSDV IKEPGSRKRI  60
KTESCAGSNS KACREKQRRD RLNDKFTELS SILEPGRAPK TDKVAIINDA IRMVNQAREE  120
AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKIEKERID QQLKAIKTQP QPQSCFLPNP  180
PTLSQAQAPG SKLVPFTTYP GFAMWQFMPP AAVDTSQDHV LRPPVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap474224
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886320.0AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0856190.0AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBankBT0024330.0BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBankBT0062730.0BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869711.11e-166transcription factor bHLH115
SwissprotQ9C6821e-160BH115_ARATH; Transcription factor bHLH115
TrEMBLD7KGW71e-165D7KGW7_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.1__4178__AT1G51070.11e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-163bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]