PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474061
Common NameARALYDRAFT_474061
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 531aa    MW: 60257.9 Da    PI: 4.7618
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474061genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.92e-22334391155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
              kpr+ Wt++LH++F+ea+e  GG+ekA Pk +l++   mkv+g+t+++v+SHLQk+R+
   474061 334 KPRMTWTEDLHQKFLEAIEIVGGIEKANPKVLLDClleMKVEGITRSNVASHLQKHRI 391
              79*****************************99865569******************7 PP
2Response_reg62.22.7e-21361431108
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vd + + + +++q++++  y +v+  +d+e+al++l  +++++++++ D  mpg+dGl++lk+i ++  +lp++++++ ++ e + +a   Ga 
        474061  36 VLVVDTNFTTLLNMKQIMKQYAY-QVTIETDAEKALAYLtsCKHEINIVIWDFHMPGIDGLQALKSIGSKM-DLPVVIMSDDNQTESVMKATINGAC 130
                   89*********************.9**999*********888888**********************6655.8************************ PP

                   EEEESS--HHHHH CS
  Response_reg  96 dflsKpfdpeelv 108
                   d+++Kp+++e + 
        474061 131 DYVVKPVKEEVIA 143
                   ******9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.96E-2733157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.7E-2834157No hitNo description
SMARTSM004485.4E-1734145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.90235150IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-1836143IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.84E-1837154No hitNo description
SuperFamilySSF466891.51E-12332394IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-20332395IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-18334391IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MLVGKISGYE DNTRSLERET SEITSLLSQF PGNTNVLVVD TNFTTLLNMK QIMKQYAYQV  60
TIETDAEKAL AYLTSCKHEI NIVIWDFHMP GIDGLQALKS IGSKMDLPVV IMSDDNQTES  120
VMKATINGAC DYVVKPVKEE VIANIWQHIV RKILMSKPDV VPPVQSDLAQ SDGLDQGQDK  180
ADFKIVDEEP NINEKPLITR TEEIQPVQSD LVQVDEVGQL NDYSKIMNQD NMFNKAATKP  240
RLTWTGVIQP VQSDLVQVNK FDQLNDYSQI MNQDNMFNKA AKKPRLTWTD VFQPVQSYLV  300
QTAGLDRDYH DSITINGGNG RQNTEKKEAK KPRKPRMTWT EDLHQKFLEA IEIVGGIEKA  360
NPKVLLDCLL EMKVEGITRS NVASHLQKHR INLEENQIPE ETQEDGWSTA YNRPAPSLQG  420
SDNVNTTISP YLMNGRAVNQ IQQNQYQNGY LTMNNNQVIT NPLPPLPYLD HQILHQHQQQ  480
QYPSSPQFNY LMSNEEPQQA SGIYATDLEL TYPSLPYDPQ EHLIKGYNYN *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap474061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160411e-162AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankCP0026841e-162CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869952.10.0LOW QUALITY PROTEIN: putative two-component response regulator ARR19
SwissprotQ9M9B91e-126ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLD7KE140.0D7KE14_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4015__AT1G49190.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.11e-177response regulator 19