PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474053
Common NameARALYDRAFT_474053
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 320aa    MW: 36354.8 Da    PI: 4.6172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474053genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.6e-1585132152
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
             sg+kGVr+++ +g+++AeIr p e   +kr +lg+f t+eeAa+a+ + +++
  474053  85 SGFKGVRRRP-WGKFAAEIRNPFE---KKRKWLGTFPTEEEAAEAYQRSKRE 132
             79********.**********644...5******************877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1585133IPR016177DNA-binding domain
CDDcd000188.13E-2185128No hitNo description
PfamPF008479.1E-1085127IPR001471AP2/ERF domain
PROSITE profilePS5103219.26986143IPR001471AP2/ERF domain
SMARTSM003802.6E-1686146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1987133IPR001471AP2/ERF domain
PRINTSPR003673.5E-88798IPR001471AP2/ERF domain
PRINTSPR003673.5E-8109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MISFREETID LNLIKTVNII CNDPDATDSS SDDESISGNN PRRQIKPKPP KRYVSKICVP  60
TLIKRYENVS NSTGNKVAGN RKSSSGFKGV RRRPWGKFAA EIRNPFEKKR KWLGTFPTEE  120
EAAEAYQRSK REFDERLGLV KPERDVTRPC GVRKPEEKEV TDKSKCKKVN KRIVTETPFG  180
CGYNADEEEG VIGKMLEDPL MTSSIADIFR DSVVEADDIW VDYNSVEFNS ILDDLKLDFV  240
ENIDSVGMEK TFGFKIGDNT KVNQHTKIVS TIADIFDDPL LDDFKLEDFP MDDFGLLGDP  300
EDDDYSWFNG TTDWIDKCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190110RRRPWGKFAAEIRNPFEKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap474053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160410.0AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankAY5608400.0AY560840.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g49120) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891477.10.0ethylene-responsive transcription factor ERF117
SwissprotQ9M9B20.0EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLD7KE060.0D7KE06_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4007__AT1G49120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.10.0ERF family protein