PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 473571 | ||||||||
Common Name | ARALYDRAFT_473571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 574aa MW: 64303.8 Da PI: 4.9178 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.6 | 1.1e-48 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +pGfrFhPtdeelvv+yLk+k+ +kl++ ++i vd+ykv+P++Lp +++k+++++w+fF++r++ky++ r++r t++gyWkatgkd+ + +++ vgl 473571 17 APGFRFHPTDEELVVYYLKRKICCRKLRI-NAIGVVDVYKVDPSELPglSMLKTGDRQWFFFTPRNRKYPNAARSSRGTATGYWKATGKDRVIEY-NSRSVGL 117 69***************************.89***************644888999*************************************99.999**** PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 kktLvfy+grap+ge+tdWvmhey++ 473571 118 KKTLVFYRGRAPNGERTDWVMHEYTM 143 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.671 | 16 | 166 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.55E-55 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-26 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MVDSSPDSCF KAGKFSAPGF RFHPTDEELV VYYLKRKICC RKLRINAIGV VDVYKVDPSE 60 LPGLSMLKTG DRQWFFFTPR NRKYPNAARS SRGTATGYWK ATGKDRVIEY NSRSVGLKKT 120 LVFYRGRAPN GERTDWVMHE YTMDEEELGR CKNAKEYYAL YKLYKKSGAG PKNGEQYGAP 180 FQEEEWVDSD SEDADNVAAP EYPVVRYENS CRVDDTKFCS PVNLQLEDIE KLLNEVPDAP 240 GVNSRQFNEF VGVPQGNSAE VIESTLLNNS SGEFLDPRKI GVFLPNGQPY NRHSSFQSQL 300 KSANSFEATS GMAPLLDFEK EEDYIEMDDL LIPELGASLT EKSTEFLRHG EFGDVNEYDQ 360 LFHDIPVSLD DPVFQGTSTN LSSLSNFTNN TSDQRQQYLN QQFQYQAPEN QLNNFMYPST 420 TINQFTDNMW FKDDQAALFV QPQSSSGAFA SQSTGVMPES MNPTMSVNAQ DKEGQNGGGT 480 RSQFSSALWE LLESIPSTPA SACEGPLNQN FVRMSSFSRI RFNGTSVTSR KVTVAKKRIS 540 NRGFLLLSIM GALCAIFWVF IATVGVLGRP VLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-44 | 18 | 143 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00178 | DAP | Transfer from AT1G34180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 473571 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493493 | 0.0 | AB493493.1 Arabidopsis thaliana At1g34180 mRNA for hypothetical protein, partial cds, clone: RAAt1g34180. | |||
GenBank | AY084860 | 0.0 | AY084860.1 Arabidopsis thaliana clone 11977 mRNA, complete sequence. | |||
GenBank | BT030344 | 0.0 | BT030344.1 Arabidopsis thaliana At1g34180 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868491.1 | 0.0 | NAC domain-containing protein 16 | ||||
Swissprot | A4FVP6 | 0.0 | NAC16_ARATH; NAC domain-containing protein 16 | ||||
TrEMBL | D7KJF4 | 0.0 | D7KJF4_ARALL; ANAC016 | ||||
STRING | fgenesh2_kg.1__3525__AT1G34180.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 0.0 | NAC domain containing protein 16 |
Link Out ? help Back to Top | |
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Phytozome | 473571 |
Entrez Gene | 9329874 |
Publications ? help Back to Top | |||
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