PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 473504 | ||||||||
Common Name | ARALYDRAFT_473504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 35305.8 Da PI: 7.8364 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.6e-53 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evikevd++k+ePwdL+ k+ + ++ewyfFs++d+ky+tg+r+nrat+sg+Wkatg+dk + + +++ 473504 8 VPPGFRFHPTDEELLHYYLKKKISYEKFEM-EVIKEVDLNKIEPWDLHDrcKIGStPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRN-CYKKI 108 69****************************.99**************852333332456*************************************9.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g++ktLvfykgrap+g+ktdW+mheyr+ 473504 109 GMRKTLVFYKGRAPHGQKTDWIMHEYRI 136 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-59 | 7 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.766 | 8 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFEMEVI KEVDLNKIEP WDLHDRCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATHSG FWKATGRDKC IRNCYKKIGM RKTLVFYKGR 120 APHGQKTDWI MHEYRIEDTD DDPSEDGWVV CRVFKKKNLF KVGNDVSSSI NNNRLEARSF 180 IRRESSYQGI SMFELNKPEE IGIHQYPQPP MFQPHHKPLS IGYDYSLALL PRESEYQQAC 240 EPSGVEVGTC KTVGEWGMVN CQMGIHEDSS RAMRFEDEGN NNPSTVQPPS NLLSLRGENG 300 FLGLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-50 | 8 | 158 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 473504 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC027035 | 0.0 | AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002891038.1 | 0.0 | protein BEARSKIN1 | ||||
Swissprot | Q9C878 | 0.0 | BRN1_ARATH; Protein BEARSKIN1 | ||||
TrEMBL | D7KIH4 | 0.0 | D7KIH4_ARALL; ANAC015 | ||||
STRING | fgenesh2_kg.1__3458__AT1G33280.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5213 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33280.1 | 0.0 | NAC domain containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | 473504 |
Entrez Gene | 9329822 |
Publications ? help Back to Top | |||
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