PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473497
Common NameARALYDRAFT_473497
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 668aa    MW: 74043.9 Da    PI: 6.0142
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473497genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.42.6e-3060144187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++   +++f+qlea
    473497  60 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 144
               8*********************************************************************86555..5******985 PP
2trihelix104.39.1e-33439523186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               rW+k e+laLi++r+ me r++++  k+ lWee+s  m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
    473497 439 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 523
               8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.93453117IPR017877Myb-like domain
SMARTSM007170.01557119IPR001005SANT/Myb domain
CDDcd122034.76E-2659124No hitNo description
PfamPF138372.1E-2059145No hitNo description
SMARTSM007170.011436498IPR001005SANT/Myb domain
PROSITE profilePS500906.667438496IPR017877Myb-like domain
PfamPF138375.7E-22438523No hitNo description
CDDcd122032.44E-29439503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010090Biological Processtrichome morphogenesis
GO:0030308Biological Processnegative regulation of cell growth
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0042631Biological Processcellular response to water deprivation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:2000038Biological Processregulation of stomatal complex development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MEQGGGGGGG NEVVEEASPI SSRPPANNLE ELMRFSAAAD DGGGGGGGGG GSASSSSGNR  60
WPREETLALL RIRSDMDSTF RDATLKAPLW EHVSRKLLEL GYKRSSKKCK EKFENVQKYY  120
KRTKETRGGR HDGKAYKFFS QLEALNTTPP SSSLDVTPLS VANPILMPTS SSSPFPVFSQ  180
PQPQPQPLQT HNVSFTPTPP PPPLPSMVPT FPGVTFSSHS SSTASGMGSD DDDDEMDVDQ  240
ANIAGSSSRK RKRGNRGGGG KMMKLFEGLV RQVMQKQAAM QRSFLEALEK REQERLDREE  300
AWKRQEMARL AREHEVMSQE RAASASRDAA IISLIQKITG HTIQLPPSLS SQPPQPPPPP  360
YQPPPAVAKR VAEPPLSTAQ SQLQQPIMAI PQQQILPPPP PPPPHLPHQP EQKQQQQQQP  420
QQQEMVMSSE QSSLPSSSRW PKAEILALIN LRSGMEPRYQ DNVPKGLLWE EISTSMKRMG  480
YNRNAKRCKE KWENINKYYK KVKESNKKRP QDAKTCPYFH RLDLLYRNKV LGSGGGSSTS  540
GLPQDQKQSP VPAMKLPQEG LVNVQQPHGS ASSEEEEPIE ESPQGTEKPE DLVMRELMQQ  600
QQESMIGEYE KIEESHNYNN MEEEEEEMDE EELDEDEKSA AFEIAFQSPA NRGGNGHTEP  660
PFLTMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110KRSSKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00177DAPTransfer from AT1G33240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap473497
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210450.0AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270350.0AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032150.0AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868150.10.0trihelix transcription factor GTL1 isoform X1
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLD7KIG80.0D7KIG8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__3451__AT1G33240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.10.0GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]