PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 473471 | ||||||||
Common Name | ARALYDRAFT_473471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 534aa MW: 59600.1 Da PI: 4.8438 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.1 | 7.4e-49 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 l+pGfrFhPtdeelvv+yLk+k+++kkl++ ++i e+d+yk++P++Lp k +k+++++w+fFs rd+k+ g+r++rat++gyWkatgkd+ +++ ++++vg 473471 10 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-DAIGETDVYKFDPEELPeKaLYKSRDRQWFFFSLRDRKH--GSRSSRATDRGYWKATGKDRVIKC-DSRNVG 108 579***************************.99**************96345667889**********86..89**********************.999*** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 kktLvf++grap+ge+t+Wvmhey+l 473471 109 EKKTLVFHRGRAPNGERTNWVMHEYTL 135 *************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-54 | 5 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.725 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 12 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:1900409 | Biological Process | positive regulation of cellular response to oxidative stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 534 aa Download sequence Send to blast |
MDLTVENGGL APGFRFHPTD EELVVYYLKR KIRRKKLRVD AIGETDVYKF DPEELPEKAL 60 YKSRDRQWFF FSLRDRKHGS RSSRATDRGY WKATGKDRVI KCDSRNVGEK KTLVFHRGRA 120 PNGERTNWVM HEYTLHEEEL KRCGGGDVKD AFVLYKIYKK SGSGPKNGEQ YGAPFIEEEW 180 AEDDDDVDEP AGVLDVPANQ LVVSAGVDNN LWGKGINQSE LDDNDIEELM RQVRDQPGRT 240 VQQNGASGLN SHVETYDSVN LEEDMYLEID DLLLPEPEPA SVEVMEKNWN QDGSGVLNDN 300 DFVDTDSYFL DLGATNPQSD PVSVGLKNGF AQSLQVNTSL VIDQANNNLF QQHTGKNQAS 360 NWPLRNSYTR QINNGSSWMQ EINNDGLNAT PFGEAPGTGD ASEFINPLTS GVSITKEDDA 420 TKDESSKFAS SVWTFLESIP ANPAYASENP FVKLNLVRMS SNGGRFRFAS KSTGNNVFVT 480 ANDSAAKRKK YGGNNDKKKN NKGFFCLSII GALCALFWVI IGTMEVSGRS LLW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-44 | 10 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-44 | 10 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-44 | 10 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-44 | 10 | 166 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-44 | 10 | 166 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-44 | 10 | 166 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 30 | 37 | KIRRKKLR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00176 | DAP | Transfer from AT1G32870 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 473471 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY034959 | 0.0 | AY034959.1 Arabidopsis thaliana putative NAM protein (At1g32870) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866587.1 | 0.0 | NAC domain-containing protein 13 | ||||
Swissprot | F4IED2 | 0.0 | NAC13_ARATH; NAC domain-containing protein 13 | ||||
TrEMBL | D7KID5 | 0.0 | D7KID5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__3425__AT1G32870.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15317 | 15 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32870.1 | 0.0 | NAC domain protein 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 473471 |
Entrez Gene | 9329807 |
Publications ? help Back to Top | |||
---|---|---|---|
|