PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473396
Common NameARALYDRAFT_473396
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 389aa    MW: 40795.6 Da    PI: 6.4287
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473396genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.26.6e-22292354163
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
             e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++l+ ++++l +e+
  473396 292 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNGENSSLRAEINKLRSQYEELLAEN 354
             89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-271106IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-40145266No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-16287350No hitNo description
PfamPF001703.3E-20292354IPR004827Basic-leucine zipper domain
SMARTSM003383.6E-21292356IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.024294357IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-11295351No hitNo description
CDDcd147021.85E-24297347No hitNo description
PROSITE patternPS000360299314IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGSSEMEKSG KEKETKTPPP SSSSSAPATA VSQEPSSSVS AGVATQDWSG FQAYSPMPPH  60
GYVASSPQPH PYMWGVQHMM PPYGTPPHPY VAMYPPGGMY AHPSLPPGSY PYSPYAMPSP  120
NGMAEASGNT GSVTEGDAKP SDGNEKLPIK RSKGSLGSLN MIIGKKNEAG KNSGASANGA  180
CSKSAESASD GSSDGSDANS QNDSGSRHNG KDGETASESG GSAHGPPRNG SNLPVNQTVA  240
IMPVSATGVP GPPTNLNIGM DYWSGHGNVS AAVPGVVVDG SQSQPWLQVC DERELKRQRR  300
KQSNRESARR SRLRKQAECD ELAQRAEVLN GENSSLRAEI NKLRSQYEEL LAENSSLKNK  360
FSSVPSLEGG DLDKNEQEPQ RSTHQDVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314RRSRLRK
2308315RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap473396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0041470.0BT004147.1 Arabidopsis thaliana clone RAFL16-02-K13 (R50047) putative G-Box binding protein (At1g32150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870248.10.0bZIP transcription factor 68 isoform X1
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLD7KHG30.0D7KHG3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__3350__AT1G32150.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]