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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
472979 |
| Common Name | ARALYDRAFT_472979 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
bHLH |
| Protein Properties |
Length: 259aa MW: 29239.9 Da PI: 6.649 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 472979 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 34.3 | 4.4e-11 | 183 | 223 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r+RR++iN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq
472979 183 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 223
9******************97.....8******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009733 | Biological Process | response to auxin |
| GO:0016049 | Biological Process | cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048766 | Biological Process | root hair initiation |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MDVFVDGELE SLLGMFNFDQ CSSSKEDRPR DEMLGLSSLY NGHIHQHQHH NNVLSSDHHA 60
LLLPDMFPFG AMPGGNLPAM LDSWDQYHHL QETPSLKRKL LDVENLCKTN SNCDVTRQEL 120
AKSKKKQRVS PESNTVDESN TNWIDGQSLS NSSDDEKASV TSVKGKTRAT KGTATDPQSL 180
YARKRREKIN ERLKTLQNLV PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPL 240
AYNGLDMGFH HNLLSRLM*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 120 | 126 | AKSKKKQ |
| 2 | 182 | 187 | RKRREK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY085436 | 0.0 | AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Han Y, et al.
Altered expression of TaRSL4 gene by genome interplay shapes root hair length in allopolyploid wheat.
New Phytol., 2016. 209(2): p. 721-32
[PMID:26334764] - Datta S,Prescott H,Dolan L
Intensity of a pulse of RSL4 transcription factor synthesis determines Arabidopsis root hair cell size.
Nat Plants, 2015. 1: p. 15138
[PMID:27251390] - Song L, et al.
The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation.
PLoS Genet., 2016. 12(7): p. e1006194
[PMID:27427911] - Vijayakumar P,Datta S,Dolan L
ROOT HAIR DEFECTIVE SIX-LIKE4 (RSL4) promotes root hair elongation by transcriptionally regulating the expression of genes required for cell growth.
New Phytol., 2016. 212(4): p. 944-953
[PMID:27452638] - Hwang Y,Choi HS,Cho HM,Cho HT
Tracheophytes Contain Conserved Orthologs of a Basic Helix-Loop-Helix Transcription Factor That Modulate ROOT HAIR SPECIFIC Genes.
Plant Cell, 2017. 29(1): p. 39-53
[PMID:28087829] - Marzol E,Borassi C,Denita Juárez SP,Mangano S,Estevez JM
RSL4 Takes Control: Multiple Signals, One Transcription Factor.
Trends Plant Sci., 2017. 22(7): p. 553-555
[PMID:28487046] - Stanley CE, et al.
Dual-flow-RootChip reveals local adaptations of roots towards environmental asymmetry at the physiological and genetic levels.
New Phytol., 2018. 217(3): p. 1357-1369
[PMID:29125191] - Feng Y, et al.
Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
[PMID:29233944] - Shibata M, et al.
GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
Development, 2018.
[PMID:29439132]
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