PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 472824 | ||||||||
Common Name | ARALYDRAFT_472824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 32011.7 Da PI: 4.2932 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.3 | 4.4e-09 | 81 | 126 | 4 | 53 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 GVr ++ +g+++AeI+ + + ++ +lg++ t+ eA ka++ + ++ 472824 81 VGVRPRP-SGKFAAEIMNpF-----TkTKKWLGTYETPAEAEKAYVDKKVEY 126 69**999.7*********66.....3499****************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.2E-102 | 1 | 276 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
SMART | SM00380 | 2.7E-4 | 78 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.97E-13 | 78 | 119 | No hit | No description |
PROSITE profile | PS51032 | 12.615 | 79 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-10 | 81 | 126 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-12 | 82 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MKSFVKPEKD SLLRTVRIIF TDPDATDDSS SSSDEWLPKP RKVKRFVHEI TFLSQVSESS 60 QDRSNAVKTP RKNTRQLKYP VGVRPRPSGK FAAEIMNPFT KTKKWLGTYE TPAEAEKAYV 120 DKKVEYDALA SSGSAVSSSV VSVTSQCLRS PASASVSCVS ADDLSKEKTS LNKDVAASGD 180 DSPMEVFTTF DFSDLKIPDL RFLAAEEDSM VSDANGAELD FDCILSAECN LLLDDYSLLD 240 NDFNISGFEN SLPSELPDCD FTEMERELDD FKFVYADQLT TPPLEFGCV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 472824 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079281 | 0.0 | AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence. | |||
GenBank | AK119144 | 0.0 | AK119144.1 Arabidopsis thaliana At1g25470 mRNA for unknown protein, complete cds, clone: RAFL21-49-G19. | |||
GenBank | BT005281 | 0.0 | BT005281.1 Arabidopsis thaliana At1g25470 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020869603.1 | 0.0 | ethylene-responsive transcription factor ERF116 | ||||
Refseq | XP_020869605.1 | 0.0 | ethylene-responsive transcription factor ERF116 | ||||
Refseq | XP_020869606.1 | 0.0 | ethylene-responsive transcription factor ERF116 | ||||
Swissprot | Q8GW17 | 1e-161 | EF116_ARATH; Ethylene-responsive transcription factor ERF116 | ||||
TrEMBL | D7KAI2 | 0.0 | D7KAI2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__2778__AT1G25470.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15119 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25470.2 | 1e-135 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 472824 |
Entrez Gene | 9329483 |