 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
4727 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
Family |
MIKC_MADS |
Protein Properties |
Length: 205aa MW: 23632.8 Da PI: 9.934 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
4727 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 93.9 | 7.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRr g+lKKA+ELSvLCda+va+iifsstgkl+ey+s
4727 9 KRIENATSRQVTFSKRRGGLLKKAHELSVLCDAQVALIIFSSTGKLFEYAS 59
79***********************************************86 PP
|
2 | K-box | 84.9 | 1.7e-28 | 83 | 173 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+++++ + ++e+ +Lk+++e q++qRhllG+dL L lk+Lq+LeqqLe +l++iRs+K++++l++ie+l+++e +l++en++Lr++++
4727 83 SQHHDSDYFSREVIRLKQQLERSQQTQRHLLGDDLAHLALKDLQSLEQQLELGLNRIRSRKEQVFLDEIEDLRRRELQLHKENEMLRRRVM 173
4566678999*****************************************************************************9987 PP
|
Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.87 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-35 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.40E-47 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.7E-31 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.458 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048481 | Biological Process | plant ovule development |
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm |
GO:0090376 | Biological Process | seed trichome differentiation |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 205 aa
Download sequence Send
to blast |
VGRGKIEIKR IENATSRQVT FSKRRGGLLK KAHELSVLCD AQVALIIFSS TGKLFEYAST 60 SMKEILDRYG KYPESVQGGN IASQHHDSDY FSREVIRLKQ QLERSQQTQR HLLGDDLAHL 120 ALKDLQSLEQ QLELGLNRIR SRKEQVFLDE IEDLRRRELQ LHKENEMLRR RVMQCPSNFV 180 NPLETREPPS FGNASLSLSS SRSQQ
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. |
Orthologous Group
? help Back to Top |
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |