PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472441
Common NameARALYDRAFT_472441
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 387aa    MW: 44012.2 Da    PI: 5.9096
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472441genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.56.7e-0999139444
             XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
             +k  rr+++NReAAr+sR+RKk  +++Lee   +L++  ++
  472441  99 DKMKRRLAQNREAARKSRLRKKVHVQQLEESRLKLSQLEQE 139
             7899*************************977777766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-790140No hitNo description
SMARTSM003380.003492154IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.1498140IPR004827Basic-leucine zipper domain
PfamPF077164.8E-5100145IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.43E-6100142No hitNo description
PROSITE patternPS000360103118IPR004827Basic-leucine zipper domain
PfamPF141448.8E-29187261IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEMMSSSSST TQVVSLRDMG MYEPFQQLSG WENPFKSDIN NNLSSNQNNN QSSSTTLEVD  60
ARPEADDNNR ANYTSVYNNN SVEAEPSSNN DQDEDRINDK MKRRLAQNRE AARKSRLRKK  120
VHVQQLEESR LKLSQLEQEL VRARQQGLCV RNSSDTSYIG PAGNMNSGIA AFEMEYTHWL  180
EEQNRRVSEI RTALQAHIGD IELKMLVDTC LNHYANLFRM KADAAKADVF FLMSGMWRTS  240
TERFFQWIGG FRPSELLNVV MPYVEPLTDQ QLLAVRNLQQ SSQQAEEALS QGLDKLQQGL  300
VESIAFQIEV IESANHGVQM VSAMENLQAL ESFVNQADHL RQQTLQQMSK ILTTRQAARG  360
LLALGEYFHR LRALSSLWAA RPREHT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00157DAPTransfer from AT1G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap472441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHTAGIA0.0L10209.1 Arabidopsis thaliana transcription factor mRNA, complete cds.
GenBankBT0260340.0BT026034.1 Arabidopsis thaliana At1g22070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869353.10.0transcription factor TGA3
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLD7KKZ80.0D7KKZ8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2395__AT1G22070.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  5. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]