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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
472077 |
| Common Name | ARALYDRAFT_472077 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
MYB |
| Protein Properties |
Length: 353aa MW: 39233.4 Da PI: 5.3022 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 472077 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ + +++G g W+t +++ g++R++k+c++rw +yl
472077 15 KGAWTPEEDQKLLSYLNRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 49.5 | 9.7e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg +T++E+ ++ +++++G++ W++Iar ++ gRt++++k++w+++
472077 68 RGEFTEDEECSIISLHALHGNK-WSAIARGLP-GRTDNEIKNYWNTH 112
899*******************.*********.************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009625 | Biological Process | response to insect |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009682 | Biological Process | induced systemic resistance |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009733 | Biological Process | response to auxin |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009739 | Biological Process | response to gibberellin |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0009759 | Biological Process | indole glucosinolate biosynthetic process |
| GO:0052544 | Biological Process | defense response by callose deposition in cell wall |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MVRTPCCKAE LGLKKGAWTP EEDQKLLSYL NRHGEGGWRT LPEKAGLKRC GKSCRLRWAN 60
YLRPDIKRGE FTEDEECSII SLHALHGNKW SAIARGLPGR TDNEIKNYWN THIKKRLIKK 120
GIDPVTHKGL NSDTDKSENL PEKQNVNQTT SDDDLDNDKA KKNNKNSGLS SARFLNRVAN 180
RFGKRINQSV LSDIIGSGGP LATTSHTTTT TTTSVSVDSE SDKSTSSSFA PTSNLLCHGT 240
VATTPVSSNF NVDGNLNPTS SSSTFSDASV NNPLMYCDNF VGNNNVDDEN TIGFPTFLND 300
EDFMMLEESC VDNTAFMKEL TRFLYEDEND VVDVPPVYER RDMFDEIDNY FG*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK117331 | 0.0 | AK117331.1 Arabidopsis thaliana At1g18570 mRNA for unknown protein, complete cds, clone: RAFL16-90-B03. |
| GenBank | AY519555 | 0.0 | AY519555.1 Arabidopsis thaliana MYB transcription factor (At1g18570) mRNA, complete cds. |
| GenBank | BT006244 | 0.0 | BT006244.1 Arabidopsis thaliana At1g18570 mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Benstein RM, et al.
Arabidopsis phosphoglycerate dehydrogenase1 of the phosphoserine pathway is essential for development and required for ammonium assimilation and tryptophan biosynthesis.
Plant Cell, 2013. 25(12): p. 5011-29
[PMID:24368794] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Frerigmann H,Gigolashvili T
MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana.
Mol Plant, 2014. 7(5): p. 814-28
[PMID:24431192] - Frerigmann H,Gigolashvili T
Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
Front Plant Sci, 2014. 5: p. 626
[PMID:25426131] - Peskan-Berghöfer T, et al.
Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots.
New Phytol., 2015. 208(3): p. 873-86
[PMID:26075497] - Frerigmann H,Glawischnig E,Gigolashvili T
The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana.
Front Plant Sci, 2015. 6: p. 654
[PMID:26379682] - Frerigmann H, et al.
Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products.
Mol Plant, 2016. 9(5): p. 682-695
[PMID:26802248] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Xu J, et al.
Pathogen-Responsive MPK3 and MPK6 Reprogram the Biosynthesis of Indole Glucosinolates and Their Derivatives in Arabidopsis Immunity.
Plant Cell, 2016. 28(5): p. 1144-62
[PMID:27081184] - Miao H, et al.
Glucose enhances indolic glucosinolate biosynthesis without reducing primary sulfur assimilation.
Sci Rep, 2016. 6: p. 31854
[PMID:27549907]
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