PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471767
Common NameARALYDRAFT_471767
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 360aa    MW: 41563.6 Da    PI: 6.8008
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471767genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10309355347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       WT+eE   l ++vk++G+  Wk I +  +     R++ ++k++w+++
           471767 309 FWTPEEVAALREGVKEYGKS-WKDIKNSNPvvlADRSEVDLKDKWRNL 355
                      5*****************88.************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.727302359IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-11304356IPR009057Homeodomain-like
SuperFamilySSF466891.79E-12304356IPR009057Homeodomain-like
SMARTSM007174.7E-8306358IPR001005SANT/Myb domain
CDDcd116602.42E-15308355No hitNo description
PfamPF002491.4E-8310355IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEVMDKWVAE FFLRRLQNPR VYASPLLSAL KPVDSDDCLK LKVTAVLRDI SNSLIRGTVD  60
EGMLDLLEIL EKLLLEEHSV IMGSLKSAYC WTAVECTLRF MWPVTASDGL FGDALERIWR  120
NRIGILKERE SDLVTRELLK WESDLIKAFE EPQIYQKIRE SDLIRYNAIS HLNQLLKEQW  180
ALLGCSSLES VAQKRFLKRK VNQQEQEHEP SLNKGNMLVA RELKDFLLEI QRLIDPSTRH  240
DQEHDNAMDQ SVDVTPQPDG ANRTEAEDSE GTSSSRRVRP HLPTPEPLNV SPLKKGRLER  300
PRPRRPMKFW TPEEVAALRE GVKEYGKSWK DIKNSNPVVL ADRSEVDLKD KWRNLFGRQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap471767
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273900.0AK227390.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-05-K06.
GenBankAY5195360.0AY519536.1 Arabidopsis thaliana MYB transcription factor (At1g15720) mRNA, complete cds.
GenBankBT0030850.0BT003085.1 Arabidopsis thaliana At1g15720 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7H20.0AC034256.3 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868088.10.0uncharacterized protein LOC9326184
TrEMBLD7KDI60.0D7KDI6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__1721__AT1G15720.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.10.0TRF-like 5