PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471184
Common NameARALYDRAFT_471184
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 440aa    MW: 50034.7 Da    PI: 6.6012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471184genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11265307754
             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               Er+RRdriN+a+  Lr ++Pk      +Kl+K+ i   Av+YI++L
  471184 265 HSERKRRDRINQAMYGLRAVVPKI-----TKLNKIGIFSDAVDYINEL 307
             57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-1412158IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.03E-11257312No hitNo description
SuperFamilySSF474593.4E-14257318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.545258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-12264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-13265321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9265307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MMMMRGGERV KEFLRPFVDS RTWDLCVIWK HGDDPSRFIE WVGCCCSGCY IDKNIKLENS  60
EEETERRKKA SFCRDEHNKH RIRTLACEAL SHFPLFMPLY PGIHGEVVMS KSPKWLVNSG  120
SKMDMFSTRV LVPVSDGLVE LFSFDMKPFD ESMVHLIMSR CTTFFEPLPE QRLPFRIIPR  180
AEESMSSGVN LSFEGGGSSS VSNPSSETQN LFGSYSNARC VEILREEQAP CMVMNKEKDG  240
LVQNANDSKA NKRLPAENFK SKNLHSERKR RDRINQAMYG LRAVVPKITK LNKIGIFSDA  300
VDYINELLAE KQKLEDELKG IDEMECKEIA AEEQSAIADP GAEKVSSKIN KKVKKNEVNL  360
EVHEIGERDF LIRVVQEHKQ DGFKRLIEAV DLCELEIIDV NFTRLDLTVL TILNVKANKD  420
GITSGILRDL LLKMIITSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMap471184
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293750.0AK229375.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor bHLH090, complete cds, clone: RAFL16-62-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870794.10.0transcription factor bHLH90
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLD7KLG20.0D7KLG2_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__1138__AT1G10610.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein