PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471177
Common NameARALYDRAFT_471177
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 175aa    MW: 20122.6 Da    PI: 10.8755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471177genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.8e-061663254
            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
            r+  n rE+ RR r+++ f+ L +++ +      ++l   +   +Av Y+ +L
  471177 16 REQRNLREKERRMRMKHLFSALSSHVSPT-----RRLPVPQLIDQAVSYMIQL 63
            7889**********************997.....7899999999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-111380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4521463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-61679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00232069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MERGREIGEG SASSLREQRN LREKERRMRM KHLFSALSSH VSPTRRLPVP QLIDQAVSYM  60
IQLKEKVNYL NEKKMSLLRG EVKNRSAGSS LLPKLSIRSR DSVIEMNLVM DLNMKRIMLH  120
KLVSVFEEEG AQVMSVNLQN LNDRTFYTII AQAIICRIGI DPSRIEKRLR DIIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMap471177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070671e-143AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankCP0026841e-143CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870804.11e-123transcription factor bHLH168
SwissprotQ9XIJ11e-112BH168_ARATH; Transcription factor bHLH168
TrEMBLD7KLF81e-121D7KLF8_ARALL; T10O24.23
STRINGfgenesh2_kg.1__1131__AT1G10586.11e-122(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-103bHLH family protein