PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB

Protein Properties

Length: 244aa MW: 27755.9 Da PI: 6.3457

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
470636	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ ++G ++W++ ++ g+ R++k+c++rw +yl 470636 14 KGPWSAEEDRILINYISLHGHPNWRALPKLAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.2	2.9e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l 470636 67 RGNFTPHEEDTIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.639	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.47E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.75E-10	16	61	No hit	No description
PROSITE profile	PS51294	23.384	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	3.62E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MGRRPCCEKI GLKKGPWSAE EDRILINYIS LHGHPNWRAL PKLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TPHEEDTIIN LHQILGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLHHNQ 120 DQNNKENFAS TTAAERLQQQ SSSSADISEI TTSGNNNDIS NNNKDSATSS EDVLAVIDES 180 FWSEVVLMDC NISGDGEKNE QKIENWEGSL DKNDKGYNHD MEFWFDHLTS SRIVGEICDI 240 SEF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-25	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269\|PubMed:16861809, ECO:0000269\|PubMed:9681014}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00127	DAP	Transfer from AT1G06180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	470636

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269\|PubMed:9681014}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY519550	0.0	AY519550.1 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds.
GenBank	BT025173	0.0	BT025173.1 Arabidopsis thaliana At1g06180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870498.1	1e-171	transcription factor MYB14
Swissprot	Q9LNC9	1e-157	MYB13_ARATH; Transcription factor MYB13
TrEMBL	D7KFB7	1e-180	D7KFB7_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.1__590__AT1G06180.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	1e-150	myb domain protein 13

Link Out ? help Back to Top
Phytozome	470636
Entrez Gene	9328387

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156]