PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 470149
Common NameARALYDRAFT_470149
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 187aa    MW: 20449.2 Da    PI: 5.078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
470149genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-183787155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  470149 37 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLKG 87
            68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-123787IPR001471AP2/ERF domain
SMARTSM003801.2E-3338101IPR001471AP2/ERF domain
PROSITE profilePS5103222.9063895IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-303896IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-213897IPR016177DNA-binding domain
CDDcd000188.56E-313996No hitNo description
PRINTSPR003675.5E-123950IPR001471AP2/ERF domain
PRINTSPR003675.5E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKLSPPPLTN SEPTATASAV KSCSGGGKET SSTTRHPVYH GVRKRRWGKW VSEIREPRKK  60
SRIWLGSFPV PEMAAKAYDV AAFCLKGRKA QLNFPDEIDD LPRPSTCTPR DIQVAAAKAA  120
NAVKIIKMGD DDVAEIDDGD DFWEGIELPE LMMTGGGWSP EPFVAGDDAT WLVDGDLYQY  180
QFMACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1636991276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap470149
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0865070.0AY086507.1 Arabidopsis thaliana clone 25524 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889375.11e-136ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-122ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLD7KQ951e-135D7KQ95_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__103__AT1G01250.11e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-110ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]