PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 46781
Common NameMICPUCDRAFT_46781
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family Nin-like
Protein Properties Length: 410aa    MW: 41245.5 Da    PI: 10.393
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
46781genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.86.6e-261060252
  RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
            +k++++e+ls++F+lpi+d+A++Lg+c+TvLK++CR++GI RWP+Rk+k+l
   46781 10 SKSLTVEELSANFHLPINDVARKLGLCVTVLKQRCREHGITRWPYRKVKKL 60
            689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.576180IPR003035RWP-RK domain
PfamPF020425.5E-221260IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MPKKRGGGQS KSLTVEELSA NFHLPINDVA RKLGLCVTVL KQRCREHGIT RWPYRKVKKL  60
DTIIHALEVA APGRAAAAAP IAADSAEASE KLALSVGDAE RERLESVRKT REVLITDPNS  120
KAHLRIGKLK AVRRRVARVS AGAGGDSSDR DTTTDDGYAR RRLSTGSGNS GGVDGLLEAA  180
ASLSDGETTP GTPRRGAKGE HTPRERSPRT SGRSTFGDDD IAEELGNAAA ALGALTEAAL  240
GRASGGGGEA QTASKPAAAA LIAKPAPAPA LGGFDPTAFA AQLAAFTPPP AAAAAAQAAR  300
GAAPVPTMPN MMAACMNPSL MFAWMSGVAN AAAAAQPAGV GVGVGPGQAA GAAAWNPNAF  360
AQMLAQANAF TARAQAQAQA AVQAAAGQQS AVAPPAAPPA NIESAHQPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057382.10.0predicted protein
TrEMBLC1MMD30.0C1MMD3_MICPC; Predicted protein
STRINGXP_003057382.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.13e-13RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]