PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462969534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | EIL | ||||||||
Protein Properties | Length: 397aa MW: 43625.5 Da PI: 4.5496 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 135.3 | 8.9e-42 | 49 | 163 | 2 | 109 |
XXXXXXXXXXXXXXXXXXXXXX..XXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 2 elkkrmwkdqmllkrlkerkkqlledkeaa.......tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraW 94 +lkkrmwkdq ll++l++r+ + k++ +++++++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYg ++e+g pv+g+sdsLr+W 462969534 49 DLKKRMWKDQLLLMKLEGRSGRDDDGKQKMacpgpdqPADQNEETPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGVVDESGVPVSGSSDSLRGW 148 8*****************99887666666567777663444556999***************************************************** PP XXXXXXXXXXXXXXX CS EIN3 95 Wkekvefdrngpaai 109 Wk++v fdr+gp+a+ 462969534 149 WKDDVGFDRAGPTAL 163 ************997 PP | |||||||
2 | EIN3 | 95.6 | 1.1e-29 | 167 | 239 | 191 | 263 |
-.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX CS EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah 263 g+ppy+kphdlkkawk+s+L+avikh+sp+++++r+l++qsk+lq+kmsa++ +++++v+ +ee++ ++v+ 462969534 167 GPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQMRKLVWQSKRLQHKMSARDADTWARVIAREEALDRHVQRA 239 59***************************************************************99888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.9E-44 | 49 | 164 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 1.0E-31 | 101 | 238 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 1.44E-27 | 102 | 232 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Pfam | PF04873 | 2.7E-25 | 167 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDDVDKPTKG KGKAGLTDDD DAAAPDSQDQ EELCFSDSES GSESIEIADL KKRMWKDQLL 60 LMKLEGRSGR DDDGKQKMAC PGPDQPADQN EETPEARYRR KAMLRAQDGV LRHMLKMMEA 120 CNARGFVYGV VDESGVPVSG SSDSLRGWWK DDVGFDRAGP TALLSGGPPP YRKPHDLKKA 180 WKISLLSAVI KHLSPRFDQM RKLVWQSKRL QHKMSARDAD TWARVIAREE ALDRHVQRAL 240 TITPLDDDGD DQDDAAGGDT PREAAHLDKR KRHGVVAGDE DASGGGEDAS GGGEMMLPLL 300 ALPDIEGVPE ADRNSIDELM KLYYRCLQGT DEGEQENGAA VVSADAGQRQ SGVGETAPAQ 360 DARLHDDMLD GLLSVAADVV DVRDFPNSPI WQWRFYD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 5e-21 | 107 | 236 | 10 | 130 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 5e-21 | 107 | 236 | 10 | 130 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462969534 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606636 | 2e-87 | AL606636.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence. | |||
GenBank | AP014960 | 2e-87 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 2e-87 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855164 | 2e-87 | CR855164.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691482.1 | 1e-119 | PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein | ||||
TrEMBL | B9F0P7 | 1e-101 | B9F0P7_ORYSJ; Uncharacterized protein | ||||
STRING | Pavir.Ga01473.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP638 | 38 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27050.1 | 2e-29 | ETHYLENE-INSENSITIVE3-like 1 |