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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
462968406 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 218aa MW: 24733.2 Da PI: 9.0018 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462968406 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.1 | 4.6e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
462968406 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59
9***********************************************96 PP
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| 2 | K-box | 98.9 | 7.6e-33 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
++ ++++ +qe+ kLk ++e Lq++qR+llGedL +Ls eL qLe+q++k lkkiRs+K+++ll+++ +l++ke++lq++n++L++kl+e
462968406 83 PSSDEMQNNYQEYVKLKTRVEVLQHSQRNLLGEDLAPLSTSELDQLESQVDKTLKKIRSRKTQVLLDELCDLKRKEQMLQDANRTLKRKLNE 174
567889***********************************************************************************976 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.9E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 2.75E-30 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.09E-40 | 2 | 79 | No hit | No description |
| PRINTS | PR00404 | 3.7E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 9.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.7E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.7E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.2E-28 | 85 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.156 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS 60
SNLLKTLERY QRYIYASADA AVPSSDEMQN NYQEYVKLKT RVEVLQHSQR NLLGEDLAPL 120
STSELDQLES QVDKTLKKIR SRKTQVLLDE LCDLKRKEQM LQDANRTLKR KLNEVDAEAA 180
PSPQLPWQGA GAAMLSDEPP QPEHFFQALE GNTSLQPA
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 2e-25 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 2e-25 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 2e-25 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 2e-25 | 75 | 172 | 1 | 101 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JN661609 | 0.0 | JN661609.1 Eleusine coracana panicle phytomer 2-like protein (PAP2) mRNA, partial cds. |
| Publications
? help Back to Top |
- Kobayashi K,Maekawa M,Miyao A,Hirochika H,Kyozuka J
PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice.
Plant Cell Physiol., 2010. 51(1): p. 47-57
[PMID:19933267] - Gao X, et al.
The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development.
Plant Physiol., 2010. 153(2): p. 728-40
[PMID:20395452] - Khanday I,Yadav SR,Vijayraghavan U
Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
Plant Physiol., 2013. 161(4): p. 1970-83
[PMID:23449645] - Lin X, et al.
The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas.
New Phytol., 2014. 202(2): p. 689-702
[PMID:24372518] - Conrad LJ, et al.
The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.
Plant J., 2014. 80(5): p. 883-94
[PMID:25279942] - Liu M,Li H,Su Y,Li W,Shi C
G1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.
Front Plant Sci, 2016. 7: p. 1006
[PMID:27462334]
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