PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967761
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 456aa    MW: 50448.8 Da    PI: 7.214
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967761genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.6e-092743111954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  462967761 274 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 311
                554459******************************88 PP
2BELL33.41.2e-111802044872
       BELL  48 pYtslAlkaiSrhFrcLkdaiaeqi 72 
                +Yt+lAl+a+SrhFrcL+da++ q+
  462967761 180 VYTRLALRAMSRHFRCLRDALVAQV 204
                8*********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-2195202IPR006563POX domain
PfamPF075262.1E-10101183IPR006563POX domain
PfamPF075261.7E-6180200IPR006563POX domain
PROSITE profilePS5007111.71252315IPR001356Homeobox domain
SMARTSM003894.0E-9255319IPR001356Homeobox domain
CDDcd000862.66E-12255316No hitNo description
SuperFamilySSF466893.29E-17256322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27258321IPR009057Homeodomain-like
PfamPF059202.1E-17272311IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAVHQHPHLL DFSAPPTMEA PPLAFHNDVD GLLDVHVVNG TDMPAGEDNT AAPWPHQAVS  60
LSLFNHSTAG ASSLDGHHHQ PFPSVAPNHH QLQSLQPLQL ISSSKYLGPV KELLGEFCSL  120
EGDDLLQYTM THKRAPNKAG KRDDVEPLSS VLCCGPSLSS MDLLELERRK VRLLSMVEEV  180
YTRLALRAMS RHFRCLRDAL VAQVRAVRKA MGGGGEISRD TPAGASKGDT PRLKVLDQCL  240
RQHHQQHSVV DNYPWRPQRG LPERAVAVLR AWLFEHFLHP YPNDVDKHIL ARQTGLSRSQ  300
VSNWFINARV RLWKPMIEEM YTEEVKQQSE VPNNNSNAVT AVKAERSTTA TSCIGGESYQ  360
CFGAAVGNPN SNSMISSSIA TDGADHLFHN GYPNLHGNHH SAVSLTLGLQ QQSFASLMMQ  420
QQQRSTHIFQ AGDREQQTAL PYRNLMGSQS LHDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15261319563Homeobox protein Meis2
3k2a_B3e-15261319563Homeobox protein Meis2
4xrm_A2e-15261319563Homeobox protein Meis2
4xrm_B2e-15261319563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462967761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964302.11e-155homeobox protein BEL1 homolog
RefseqXP_004964303.11e-155homeobox protein BEL1 homolog
SwissprotQ388972e-82BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0A9N9I21e-158A0A0A9N9I2_ARUDO; Uncharacterized protein
STRINGSi006303m1e-154(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.13e-74TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]