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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462967745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 14814 Da PI: 11.2757 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 86.8 | 1.8e-27 | 12 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+kv tpsdv+k++rlv+pk+fae+h g + ++ l + d +g +W+++++y+++s++yv+tkGW+++v++++L +gD+v F r++++l++ 462967745 12 FEKVVTPSDVGKLNRLVVPKHFAEKHlpllGPAARAGTVLCFHDARGghATWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAAGDTVSFC---RDGARLFL 108 99***************************9666778899*****99999***************************************9...45566777 PP EEE-S CS B3 95 kvfrk 99 +r+ 462967745 109 DCRRR 113 77765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-34 | 9 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-25 | 10 | 104 | No hit | No description |
SuperFamily | SSF101936 | 2.75E-28 | 11 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.139 | 12 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-24 | 12 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-21 | 12 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
METGGGGVER LFEKVVTPSD VGKLNRLVVP KHFAEKHLPL LGPAARAGTV LCFHDARGGH 60 ATWRFRYSYW GSSQSYVMTK GWSRYVRDKR LAAGDTVSFC RDGARLFLDC RRRVKRPSIG 120 RAGARRATTT SPC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-40 | 9 | 120 | 5 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-40 | 9 | 120 | 5 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462967745 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304886.1 | 1e-52 | B3 domain-containing protein Os06g0107800-like | ||||
Swissprot | Q5VS55 | 1e-50 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A2T7E3W7 | 2e-51 | A0A2T7E3W7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db02478.1.p | 1e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-41 | B3 family protein |