 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
462967448 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
GATA |
| Protein Properties |
Length: 316aa MW: 32192.4 Da PI: 8.7905 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462967448 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 53 | 4.5e-17 | 76 | 103 | 1 | 28 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGl 28
C+nCgtt+TplWR+gp+g+k+LCnaCG+
462967448 76 CANCGTTSTPLWRNGPRGPKSLCNACGI 103
***************************9 PP
|
| 2 | GATA | 65.2 | 7.4e-21 | 193 | 227 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++
462967448 193 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 227
********************************986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00401 | 2.4E-11 | 70 | 114 | IPR000679 | Zinc finger, GATA-type |
| PROSITE profile | PS50114 | 13.877 | 70 | 103 | IPR000679 | Zinc finger, GATA-type |
| SuperFamily | SSF57716 | 2.19E-12 | 72 | 108 | No hit | No description |
| Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 72 | 104 | IPR013088 | Zinc finger, NHR/GATA-type |
| CDD | cd00202 | 1.14E-11 | 75 | 102 | No hit | No description |
| PROSITE pattern | PS00344 | 0 | 76 | 101 | IPR000679 | Zinc finger, GATA-type |
| Pfam | PF00320 | 1.1E-14 | 76 | 103 | IPR000679 | Zinc finger, GATA-type |
| SMART | SM00401 | 1.8E-21 | 187 | 239 | IPR000679 | Zinc finger, GATA-type |
| PROSITE profile | PS50114 | 14.444 | 187 | 223 | IPR000679 | Zinc finger, GATA-type |
| SuperFamily | SSF57716 | 4.09E-14 | 189 | 227 | No hit | No description |
| Gene3D | G3DSA:3.30.50.10 | 1.4E-17 | 191 | 227 | IPR013088 | Zinc finger, NHR/GATA-type |
| CDD | cd00202 | 2.44E-14 | 192 | 224 | No hit | No description |
| PROSITE pattern | PS00344 | 0 | 193 | 218 | IPR000679 | Zinc finger, GATA-type |
| Pfam | PF00320 | 1.9E-18 | 193 | 227 | IPR000679 | Zinc finger, GATA-type |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MSASSTTFSL FFHSSITTSP SSPSSSAGSA VDCTLSLGTP SSRRAAESSS YYGHQGVKPA 60
GGRGAAAHDA FADRRCANCG TTSTPLWRNG PRGPKSLCNA CGISSITTSP SSPSSSAGSA 120
VDCTLSLGTP SSRRAAESVE QTMRVAPPAN AHPNVSAWDV AADHQSSYYG HQGVKPAGGR 180
GAAAHDAFAD RRCANCGTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAA ATAAMESGGS 240
AAGCGYSAQR AQYEYGAAAA KASPGAVSYG EGAFPCGGDA DANASFLAWR LNVVAPAPAP 300
AFAAMWPERT SLFQYN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP095696 | 4e-42 | FP095696.1 Phyllostachys edulis cDNA clone: bphyst013i06, full insert sequence. |
