PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966958
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family FAR1
Protein Properties Length: 440aa    MW: 49390.5 Da    PI: 7.9162
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966958genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.41.9e-132864135
       GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
               C  Cg +   Tp++Rrgp+g +tLCnaCG+ ++k ++
  462966958 28 CLRCGISAsaTPHMRRGPEGRRTLCNACGIAWAKGKM 64
               5567766666***********************9875 PP
2FAR187.52e-2796181188
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                +fYn YA +vGFsvrks+s ks  ++ + +rtfvCs+eg+r+++k + ++ +r+r+etr+gC a++++k + dgk+++++++ +HnH+
  462966958  96 EFYNWYAGHVGFSVRKSSSDKS-ADNITRSRTFVCSREGFRKDKKGA-KEVKRPRPETRIGCPARMTIKITLDGKYRIAEFVADHNHQ 181
                6********************9.555699**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.71E-92271No hitNo description
SMARTSM004015.1E-62274IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-112665IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.59E-62765No hitNo description
PfamPF003206.2E-113062IPR000679Zinc finger, GATA-type
PfamPF031013.1E-2496181IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.889354401IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MQFDDERDTG LGGGNGEIDD RLDEPTRCLR CGISASATPH MRRGPEGRRT LCNACGIAWA  60
KGKMRKVIDS DAHIDAAAKM VPELGMEFDN EDKAYEFYNW YAGHVGFSVR KSSSDKSADN  120
ITRSRTFVCS REGFRKDKKG AKEVKRPRPE TRIGCPARMT IKITLDGKYR IAEFVADHNH  180
QPAPPSTMHM LRSQRVLTEL QTTDADSSED STTPSRFSSG LPMQQAGATR NVKPLPDRDK  240
WASFYNRHVF TADIKNSLQT ESVSSVLKKY LSPQFELSSF FKHLERVLDE HRYAELQADF  300
HASQSVPRIP PSKMLKQAAN IYTPVVFEIF RREFEMFVDS VIYSCGETGT ASDYRVAVTD  360
KPGEHYVKFE PSDFSVVCSC KKFESMGIQC CHVLKDSSVS SFHRNGLHGG AQGDQDYTPL  420
AGMQQQQFLG NFHLSNGTSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144148KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985480.11e-147protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_021301566.11e-147protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLB8APN80.0B8APN8_ORYSI; Uncharacterized protein
STRINGGSMUA_Achr2P15020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-23FAR1-related sequence 5