![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462966926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 85aa MW: 9294.58 Da PI: 9.5617 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 2 | 25 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k+Fs s+L++H + + 462966926 2 YVCNRCNlKHFSVLSDLRTHEKHC 25 9*******************9976 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 33 | 49 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L+ H+ 462966926 33 SCGTSFSRKDKLVGHLA 49 6**************86 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 85 aa Download sequence Send to blast |
MYVCNRCNLK HFSVLSDLRT HEKHCGDHRW LCSCGTSFSR KDKLVGHLAL FAGHHPAVPL 60 DTTRSANGGK RTSTSAASTP APPHL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462966926 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK063290 | 1e-54 | AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence. | |||
GenBank | AP004587 | 1e-54 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. | |||
GenBank | AP005544 | 1e-54 | AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01. | |||
GenBank | AP014964 | 1e-54 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-54 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020402817.1 | 4e-39 | protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
Swissprot | Q943I6 | 7e-28 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A1D6KM37 | 8e-38 | A0A1D6KM37_MAIZE; C2H2 and C2HC zinc fingers superfamily protein | ||||
TrEMBL | A0A317Y329 | 2e-38 | A0A317Y329_MAIZE; Zinc finger protein STOP1 | ||||
STRING | Sb07g023890.1 | 1e-37 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G34370.2 | 9e-30 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|