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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462966519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 192aa MW: 21741 Da PI: 6.5305 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.4e-20 | 70 | 122 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le++Fe +++++ +++ ++A+ lgL+ rqV vWFqNrRa++k 462966519 70 KRRLALEQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWK 122 4567789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128 | 4.1e-41 | 68 | 159 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE++Fe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktkqlE+d++aL +++dal+++ ++L++++++L++e++ 462966519 68 EKKRRLALEQVRALERCFETDNKLDPDRKSRIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALCSRHDALRADCDALRRDKDALAAEVR 159 69*************************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.42E-19 | 61 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-19 | 67 | 128 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.358 | 68 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.53E-14 | 69 | 125 | No hit | No description |
Pfam | PF00046 | 6.2E-17 | 70 | 122 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 76 | 123 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 95 | 104 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 104 | 120 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.8E-12 | 124 | 159 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MKRQSKRPTR SHESTEPGEK LAFSEEEPLT ARNMEHEDQA EMDDVDEDDD EELASGRAAR 60 SSSCGLGEKK RRLALEQVRA LERCFETDNK LDPDRKSRIA RDLGLQPRQV AVWFQNRRAR 120 WKTKQLERDF AALCSRHDAL RADCDALRRD KDALAAEVRG IALSRRTHTG AEAKAVQAGD 180 DDGEVGGGRQ RQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 124 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462966519 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC121489 | 1e-129 | AC121489.2 Oryza sativa Japonica Group chromosome 3 clone OJ1217B09, complete sequence. | |||
GenBank | AP014959 | 1e-129 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798128.1 | 8e-77 | homeobox-leucine zipper protein HOX13-like | ||||
Swissprot | Q10QP3 | 4e-63 | HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | A0A0A9PIJ1 | 4e-79 | A0A0A9PIJ1_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ia04906.1.p | 2e-77 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 6e-31 | homeobox protein 5 |
Publications ? help Back to Top | |||
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