PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 204aa MW: 22921.1 Da PI: 10.1244

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462966483	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.7	2e-25	12	61	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s 462966483 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61 89********************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-33	3	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.137	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-29	5	80	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.67E-38	5	76	No hit	No description
PROSITE pattern	PS00350	0	5	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.9E-25	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-24	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.9E-25	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.9E-25	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA 60 SSSMKQIIDR YDSHSKTLQR SQVSSQPSQK IIDEINGLER KASTRMQLIE ENARLKEQVK 120 SMLSFALSSN LLFPVKSHLN DHLKLQVSRM ARLEMQAGAD SEVVYEEGQS SESVTNTSYP 180 RAPVDNDDSS DTSLRLGLPL FTSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-19	5	102	3	95	MEF2C
5f28_B	4e-19	5	102	3	95	MEF2C
5f28_C	4e-19	5	102	3	95	MEF2C
5f28_D	4e-19	5	102	3	95	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462966483

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ249141	8e-89	AJ249141.1 Hordeum vulgare mRNA for MADS-box protein (m1 gene).
GenBank	AJ249142	8e-89	AJ249142.1 Hordeum vulgare mRNA for MADS-box protein 1-2 (m1-2 gene).
GenBank	AK250506	8e-89	AK250506.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf74i01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021307342.1	6e-84	MADS-box transcription factor 47-like isoform X2
Refseq	XP_021307343.1	6e-84	MADS-box transcription factor 47-like isoform X2
Swissprot	Q5K4R0	5e-74	MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBL	A0A1E5VFN4	4e-85	A0A1E5VFN4_9POAL; MADS-box transcription factor 47
STRING	Pavir.Ia04527.1.p	1e-83	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1221	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	5e-48	MIKC_MADS family protein

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489]