PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462966007

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 207aa MW: 22883.5 Da PI: 8.2018

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462966007	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.1	1.7e-12	51	105	8	62
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r ++NR +A +sR+RKk +i+eLe+k+k Leae ++L l+ + e +l+++ 462966007 51 IRQMRNRDSAMKSRERKKTYIKELETKSKYLEAECRRLSYALQCYAAENMALRQS 105 79************************************99999888888777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.002	43	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.56E-11	50	106	No hit	No description
Pfam	PF00170	3.9E-10	51	105	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-12	52	107	No hit	No description
CDD	cd14704	7.50E-13	52	100	No hit	No description
PROSITE pattern	PS00036	0	52	66	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	52	104	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MQEGDAEVGG AVDGVSVEEF FDALYDGGEG EEKGKEIGQC VLLRELCCKF IRQMRNRDSA 60 MKSRERKKTY IKELETKSKY LEAECRRLSY ALQCYAAENM ALRQSVLKDR PVGAPTAMQE 120 SAVLMETLPL VSLLWLVSIV CLFLMPGLPN RSPAAPRSSG RDLGTVAGKT SSEHLETLDL 180 ILHGRRCKGT RARIKLSTLP FHAVAAC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462966007

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP033192	0.0	KP033192.1 Eleusine coracana cultivar GPU28 bZIP transcription factor (bZIP60) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965858.1	1e-108	bZIP transcription factor 50
Swissprot	Q69XV0	2e-82	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A0C5KQY6	1e-107	A0A0C5KQY6_ELECO; BZIP transcription factor
STRING	Si006978m	1e-107	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-13	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]