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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462965650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 196aa MW: 22686.7 Da PI: 5.2412 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.4 | 6.2e-14 | 15 | 106 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l ++++ l+lp kf + g ++++++++l s Wev++ +++++++++l++GW++F++ +L+eg +vF++d + + +v++ 462965650 15 FFKIL--LPGMSKNKLRLPSKFE-QVlG--ERRDVKMRLAGaASMPLWEVEV-VSGGDDGVYLGRGWRQFARTYELREGHLLVFRYDTGDVLNVTVSL 106 88999..77888889*******5.4424..56999*****977779******.7899999*************************9866666666655 PP | |||||||
2 | B3 | 40.4 | 5.2e-13 | 109 | 157 | 42 | 88 |
TS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 42 sgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 g+sW+v+l+ r +++r+ ++ GW +F+ +ngL++gD++ F++++++ 462965650 109 GGKSWTVNLKRgkRARGDRTAFKYGWHQFCVDNGLEVGDTCFFRVIRER 157 69*******7765556666*************************98764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 6.90E-13 | 13 | 104 | No hit | No description |
PROSITE profile | PS50863 | 11.561 | 13 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.32E-15 | 14 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-10 | 15 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-9 | 15 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-16 | 15 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.08E-11 | 102 | 158 | No hit | No description |
SuperFamily | SSF101936 | 1.16E-11 | 102 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-14 | 105 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.7E-10 | 109 | 157 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.475 | 110 | 169 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEQGMADLRL GDFEFFKILL PGMSKNKLRL PSKFEQVLGE RRDVKMRLAG AASMPLWEVE 60 VVSGGDDGVY LGRGWRQFAR TYELREGHLL VFRYDTGDVL NVTVSLRMGG KSWTVNLKRG 120 KRARGDRTAF KYGWHQFCVD NGLEVGDTCF FRVIRERSGI KEEDAEDEQW EWEEEEEDDE 180 HVLKVEVRKK DGAFVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462965650 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796563.1 | 1e-33 | B3 domain-containing protein Os03g0212300-like | ||||
Refseq | XP_025796564.1 | 1e-33 | B3 domain-containing protein Os03g0212300-like | ||||
Swissprot | Q10Q26 | 9e-30 | Y3123_ORYSJ; B3 domain-containing protein Os03g0212300 | ||||
TrEMBL | A0A0D3FFC8 | 1e-46 | A0A0D3FFC8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G08090.1 | 2e-47 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-07 | B3 family protein |
Publications ? help Back to Top | |||
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