PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462964340

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 169aa MW: 18467.8 Da PI: 6.5113

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462964340	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.8	1.4e-36	17	117	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCvl+pyfpa+qp+++a vh +FG+sn ++ll++lp +er +a+++++ eA++r++dPvyG++g+i +lqqq++ ++ +la+++++ 462964340 17 RCAACKYLRRRCAPDCVLSPYFPASQPRRYADVHAVFGTSNATRLLQSLPVQERGRAADTMATEARWRVQDPVYGSAGIIDRLQQQIRAAQRDLATTRAQ 116 6**********************************************************************************************99987 PP DUF260 101 l 101 l 462964340 117 L 117 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.272	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-36	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSSSGSIAGN NNPWTRRCAA CKYLRRRCAP DCVLSPYFPA SQPRRYADVH AVFGTSNATR 60 LLQSLPVQER GRAADTMATE ARWRVQDPVY GSAGIIDRLQ QQIRAAQRDL ATTRAQLAFP 120 PPPSTLLLPP PAAAASAIDG GRLLAVRHEE EEEEAPPMDP DEFLDLGDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	18	117	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	18	117	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462964340

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683529.1	3e-65	LOB domain-containing protein 24
Swissprot	P59467	3e-36	LBD23_ARATH; LOB domain-containing protein 23
Swissprot	P59468	3e-36	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	K3YMP0	2e-66	K3YMP0_SETIT; Uncharacterized protein
STRING	Si015521m	3e-67	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	9e-38	LOB domain-containing protein 23