PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462964133

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 374aa MW: 41354.4 Da PI: 7.2716

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462964133	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.2e-06	221	240	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n+++H 462964133 221 FVCHVCNKTFNRYNNMQVHT 240 89*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.619	221	251	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.2E-4	221	239	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.47E-5	301	337	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MGLRTCAMEG ETVGSPFFHQ WLKPRCSSSS SSSSSPSSAY SSSSAAASMA SRHQEGEGGG 60 QEASSMTCLP LLSRLEGKRP DDHHEPQYPV KEEIIMSGAT GGGMWQSGVD LHIGLPVGGG 120 SGNDEDAAME EQKDDDDDHR HHHQEEDDME EEEEEWKHAR GGCKAEGDEM ERGEVVPVSV 180 EGSSKIVVGE FGPVGAESGA AMGCQYWIPT PAQILIGPVQ FVCHVCNKTF NRYNNMQVHT 240 MFSRMHALQM HMWGHGREYR KGPDSLKGTQ TLALLKLPCY CCAAGCRNNV AHPRARPLKD 300 FRTLQTHYKR KHGAKPFRCR RCAKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH 360 VRSFGGLCCS PAWI

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MGLRTCAMEG ETVGSPFFHQ WLKPRCSSSS SSSSSPSSAY SSSSAAASMA SRHQEGEGGG  60
QEASSMTCLP LLSRLEGKRP DDHHEPQYPV KEEIIMSGAT GGGMWQSGVD LHIGLPVGGG  120
SGNDEDAAME EQKDDDDDHR HHHQEEDDME EEEEEWKHAR GGCKAEGDEM ERGEVVPVSV  180
EGSSKIVVGE FGPVGAESGA AMGCQYWIPT PAQILIGPVQ FVCHVCNKTF NRYNNMQVHT  240
MFSRMHALQM HMWGHGREYR KGPDSLKGTQ TLALLKLPCY CCAAGCRNNV AHPRARPLKD  300
FRTLQTHYKR KHGAKPFRCR RCAKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH  360
VRSFGGLCCS PAWI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462964133

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-159	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819090.1	1e-149	protein TRANSPARENT TESTA 1-like
TrEMBL	A0A1E5UZU8	1e-153	A0A1E5UZU8_9POAL; Zinc finger protein WIP5
STRING	Pavir.J31116.1.p	1e-152	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	4e-86	C2H2 family protein