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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462963844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 23184.7 Da PI: 4.4048 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.6e-14 | 63 | 101 | 6 | 46 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + E++l++ + k lG++ W++Ia++m+ gRt++++k++w++ 462963844 63 PSEEDLIISLQKVLGNR-WSSIAARMP-GRTDNEIKNYWNS 101 67***************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.506 | 47 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-8 | 57 | 105 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.18E-11 | 63 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-12 | 63 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.82E-11 | 63 | 100 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-18 | 63 | 104 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAPSVSLTVQ PKMLKPPNTV IYSALSRVDD EEHEDNPENE GYEEDSDPNF KGKLYFSLIM 60 IDPSEEDLII SLQKVLGNRW SSIAARMPGR TDNEIKNYWN SRIKKKLRMM GADRHQSPGT 120 SQTAAKSTHC NTEYGNLDVN TSHNSCANEM PHPHFPIFEC DSLSDEQNCE QAAYSSLSKN 180 NEIDLLVEDY VDFLMSLPDD LHADI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 107 | RIKKKLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462963844 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448905.2 | 6e-31 | transcription factor MYB57 | ||||
TrEMBL | A0A1E5UMZ9 | 6e-34 | A0A1E5UMZ9_9POAL; Myb-related protein Hv33 | ||||
STRING | GRMZM2G032180_P01 | 4e-24 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 7e-20 | myb domain protein 46 |