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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462963760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26637.6 Da PI: 7.7897 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.9 | 5.6e-30 | 17 | 119 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvv 94 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ + +l++ 462963760 17 FEKPLTPSDVGKLNRLVIPKQHAERYfplsGDSGEKGLILSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKNLDAGDVVHFERMRGlgFGDRLFI 116 99***************************9666668889************************************************8765333344555 PP EEE CS B3 95 kvf 97 +++ 462963760 117 GFR 119 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-41 | 12 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-29 | 14 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.57E-29 | 15 | 107 | No hit | No description |
Pfam | PF02362 | 2.3E-27 | 17 | 120 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.846 | 17 | 121 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.1E-25 | 17 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MYTNLHYQHH YEREHLFEKP LTPSDVGKLN RLVIPKQHAE RYFPLSGDSG EKGLILSFED 60 EAGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKNLDAGDVV HFERMRGLGF GDRLFIGFRR 120 RGESATAAVS PLPPVRVAAA AQTAGEQQPW SPMCYSTSGS YPNSPANSYA YRQSVDHDHS 180 NTHHAGESSA ALVPSRRLRL FGVNLDCGPE PEAETPTAMY GYMHQSPYAS FAEPNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-52 | 12 | 121 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-52 | 12 | 121 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462963760 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827829.1 | 1e-131 | B3 domain-containing protein Os11g0156000-like isoform X1 | ||||
Swissprot | Q53QI0 | 1e-115 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A3L6PZ85 | 1e-132 | A0A3L6PZ85_PANMI; Uncharacterized protein | ||||
STRING | Traes_5BL_B98E347A8.1 | 1e-130 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 4e-60 | B3 family protein |
Publications ? help Back to Top | |||
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