PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 732aa MW: 82222.3 Da PI: 5.2757

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462963341	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.9	7.4e-08	137	160	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C GdrC+F Hgp 462963341 137 MVPCYYFQK-GNCIKGDRCPFYHGP 160 789****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.568	24	53	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0064	25	52	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	3.7E-12	26	80	No hit	No description
PROSITE profile	PS50103	12.183	55	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.041	57	80	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.5E-6	134	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.901	134	161	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.26E-5	135	159	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-5	136	160	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-4	138	160	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
DGAAAAGAGA EAGAKPLTPE EEALRRNTDC VYFLASPLTC KKGNECDFRH SDGARMNPRD 60 CWYWMNGNCM NPKCPFRHPP IDGLFGAPTP GVPSVSSHYG AYNSGKQMPI DGLFGAPTPG 120 VPSVSSHYGA YNSGKQMVPC YYFQKGNCIK GDRCPFYHGP QGAGNNPPEQ LARVSSFPLE 180 QPQAQKREAS TEPNNLMQQG APIIGDRSKL AVDRSMVHAA KNGVVALPSE LTSNSVKSRL 240 KSEKVPNTSA VKKSFMTAEE DHSACYQNQL APDGEPMQDW HQDFTMPPTD DLPQNSRDAD 300 DFLGESSPGF DVLVDNDADG AAYLHDEEDF GREMYPVEDY DYAPADFDTQ AHNERERFNG 360 MDEHSQIGRL YDGYERKRRR SSPERSMDRP FHSDRRYAHR EIDRADMDRS DLRHQIRRRR 420 INTYSAAISP ERNIEQHKRG EHYRERAHGG HHTHRDRHSG PRGSTLSSRL QGRIKLPGRS 480 PDRFDTRFEN ERDRKRLRDR LSPVRHDVHG GHREAGQHHE RSQRRQSELA SSVRHADVRY 540 SRRDAIDSVH LGARKNLGEP RKANGIMDSE PSLDFEGPKP LSVILQRKRE AAVSNNSSSS 600 CEKSAEAAVR QPGSLVEAEK KDSENNISSE YCKSGSGDEE YKEDEDQVPV EGQGQSSSHG 660 DKFNVEDITE VDPSTNQDAD NYEQREGESD DYETMEGQEY KSEDENAYQD DEDFDDDDDD 720 DDFAQKVGVV FS

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

DGAAAAGAGA EAGAKPLTPE EEALRRNTDC VYFLASPLTC KKGNECDFRH SDGARMNPRD  60
CWYWMNGNCM NPKCPFRHPP IDGLFGAPTP GVPSVSSHYG AYNSGKQMPI DGLFGAPTPG  120
VPSVSSHYGA YNSGKQMVPC YYFQKGNCIK GDRCPFYHGP QGAGNNPPEQ LARVSSFPLE  180
QPQAQKREAS TEPNNLMQQG APIIGDRSKL AVDRSMVHAA KNGVVALPSE LTSNSVKSRL  240
KSEKVPNTSA VKKSFMTAEE DHSACYQNQL APDGEPMQDW HQDFTMPPTD DLPQNSRDAD  300
DFLGESSPGF DVLVDNDADG AAYLHDEEDF GREMYPVEDY DYAPADFDTQ AHNERERFNG  360
MDEHSQIGRL YDGYERKRRR SSPERSMDRP FHSDRRYAHR EIDRADMDRS DLRHQIRRRR  420
INTYSAAISP ERNIEQHKRG EHYRERAHGG HHTHRDRHSG PRGSTLSSRL QGRIKLPGRS  480
PDRFDTRFEN ERDRKRLRDR LSPVRHDVHG GHREAGQHHE RSQRRQSELA SSVRHADVRY  540
SRRDAIDSVH LGARKNLGEP RKANGIMDSE PSLDFEGPKP LSVILQRKRE AAVSNNSSSS  600
CEKSAEAAVR QPGSLVEAEK KDSENNISSE YCKSGSGDEE YKEDEDQVPV EGQGQSSSHG  660
DKFNVEDITE VDPSTNQDAD NYEQREGESD DYETMEGQEY KSEDENAYQD DEDFDDDDDD  720
DDFAQKVGVV FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	379	RKRRR
2	375	380	RKRRRS
3	493	499	RKRLRDR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462963341

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971009	2e-89	EU971009.1 Zea mays clone 355753 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
GenBank	KJ726893	2e-89	KJ726893.1 Zea mays clone pUT3436 C3H transcription factor (C3H14) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823987.1	0.0	zinc finger CCCH domain-containing protein 32-like
Swissprot	Q0J952	0.0	C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A3L6PV30	0.0	A0A3L6PV30_PANMI; Uncharacterized protein
STRING	Pavir.J37523.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6604	32	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]