PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462961030
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 280aa    MW: 31725.5 Da    PI: 9.2336
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462961030genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-19145231195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k++++s+v++  +l lp +f+++h   ++++++++lede+g +++  +   +++ +  l++GW++F+  ++L++gD++vF+l++ ++f+    
  462961030 145 FVKTMVRSHVSSCFWLGLPSSFCKKHL--PPREFKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFAMHHDLEDGDSLVFELVEPDRFKI--Y 231
                89************************5..34779****************..555444..***********************998788844..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-22137234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-25138234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-28143232No hitNo description
PfamPF023621.7E-18145232IPR003340B3 DNA binding domain
SMARTSM010198.0E-24145236IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534145236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MATTASGDAS GTAYEEQRRK RVLENLKHLE ELGIKEMSKS LLQASRLQNK NKVREGGARA  60
SPKPRKKLDA SEVRRSSRAK ATVSYKEDFG ELDNFLRHKR RTGNSKSAEH GREYTGRVSS  120
YQQQERAFKR AEKLQYSLDP ENPSFVKTMV RSHVSSCFWL GLPSSFCKKH LPPREFKMVL  180
EDEEGVEFDA VYIGNRTGLS GGWRGFAMHH DLEDGDSLVF ELVEPDRFKI YIMKAIDDDV  240
AEEAESDDNA GGDTKDEPQD DSPAAEPPKG AKRRKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273PKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462961030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949791e-131FP094979.1 Phyllostachys edulis cDNA clone: bphyst037c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809297.11e-158B3 domain-containing protein Os05g0481400-like isoform X2
SwissprotQ5KQI41e-135Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2S3HB281e-157A0A2S3HB28_9POAL; Uncharacterized protein
STRINGPavir.J04157.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]