PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960780
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 296aa    MW: 31701.9 Da    PI: 8.2347
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960780genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.2e-3945106263
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                +e+alkcprCds+ntkfCyynny++sqPryfCkaCrryWt+GG+lrnvPvGg+rrknk+sss
  462960780  45 REEALKCPRCDSNNTKFCYYNNYNMSQPRYFCKACRRYWTQGGTLRNVPVGGARRKNKRSSS 106
                67899*****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2643102IPR003851Zinc finger, Dof-type
PfamPF027016.7E-3447103IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.15249103IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105187IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAERSDYAVL HPDGVDTMEE ARNVNQALQQ HTASGDGVQM PRPQREEALK CPRCDSNNTK  60
FCYYNNYNMS QPRYFCKACR RYWTQGGTLR NVPVGGARRK NKRSSSSSSA SPSSSNTIAR  120
AINNNNNNMP TLSALTSFPN VLPTFMSTGF EFSLPLAPPL SLSRSVAPAP ALVSGGSMVT  180
TPSFLDLLRG GVLDHEGSGG NGMERSLPSS FGLGVMQHGV MGDHRDVASI GGGSATATTQ  240
LGGQHQWVGA QHEHNKDDGS ATGSDRLQQV GVDQQWNGVL KDRDNKNGSS TSGDNH
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302218.13e-54dof zinc finger protein PBF
SwissprotO244634e-54PBF_MAIZE; Dof zinc finger protein PBF
TrEMBLF6KPP63e-53F6KPP6_SORBI; Dof-type zinc finger protein
STRINGSi026678m5e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-33TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Lang Z, et al.
    Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication.
    J. Hered., 2014 Jul-Aug. 105(4): p. 576-582
    [PMID:24683184]
  2. Zhang Z,Zheng X,Yang J,Messing J,Wu Y
    Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7
    [PMID:27621432]