PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462960735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | TALE | ||||||||
Protein Properties | Length: 566aa MW: 63001.2 Da PI: 6.3344 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.7 | 4.6e-09 | 407 | 444 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +q+++WF N R + 462960735 407 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 444 665559******************************88 PP | |||||||
2 | BELL | 119.4 | 1.6e-38 | 270 | 341 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+ +l+eVd++Yk+y++q+qtv+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi 462960735 270 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQTVVSSFDVVAGPGAAKPYTAVALHTISRHFRCLKDAINDQI 341 689*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.1E-58 | 194 | 339 | IPR006563 | POX domain |
Pfam | PF07526 | 2.6E-51 | 200 | 337 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.325 | 385 | 448 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-9 | 388 | 452 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.28E-12 | 388 | 449 | No hit | No description |
SuperFamily | SSF46689 | 2.35E-17 | 389 | 454 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-28 | 391 | 454 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.9E-18 | 405 | 444 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MATYYSSPGT EKDSQNMYSR DPGGASYPMP SALGNLLYLN NPTSGPYTEF SGILQSQQNC 60 MEIPDPGHPS VMSQDSSARE SDMLGSHQGQ HSFNSVKDMK NEMLMHMMDG SQSSTANLIH 120 DDAHNGAQLE FGVLNNHSPS NVPSVQGQGL SLSLNTQILA PSLPYWSIKP DMLSPQSYHD 180 SLRVDDIRMK SMQSEASRAI RNSRYLKAAQ ELLDEVVNVW KNIKQKAQKE QGDAGKADGK 240 ENEGGPKSEG VSSNPQESAA NTAPELSTAE KQELQNKMAK LMAMLDEVDR KYKHYYHQMQ 300 TVVSSFDVVA GPGAAKPYTA VALHTISRHF RCLKDAINDQ INVIRKKLGE EENSSGKEGK 360 LTRLRYIDQQ LRQQRAFQQY GMIPQNAWRP QRGLPENSVT ILRAWLFEHF LHPYPKDSEK 420 LMLARQTGLT RSQISNWFIN ARVRLWKPMI EDMYKEEIGD IEQDSNSSSD NAPRSKAKVT 480 SSEDKEDLKS STTRVCETSQ LSESRASIGT ANVGGAPVGF QNEANHDESF MNLMLKDQRS 540 NDADGGLLLH NAVAHHTDEN ALSLVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 8e-16 | 394 | 451 | 5 | 62 | Homeobox protein Meis2 |
3k2a_B | 8e-16 | 394 | 451 | 5 | 62 | Homeobox protein Meis2 |
4xrs_A | 5e-16 | 394 | 451 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 5e-16 | 394 | 451 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462960735 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963319.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_004963320.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_004963321.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | O65685 | 1e-116 | BLH6_ARATH; BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A1E5WAR5 | 0.0 | A0A1E5WAR5_9POAL; BEL1-like homeodomain protein 6 | ||||
STRING | Si021437m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP901 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-105 | BEL1-like homeodomain 6 |
Publications ? help Back to Top | |||
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