PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462960139

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Trihelix

Protein Properties

Length: 271aa MW: 29843 Da PI: 9.4526

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462960139	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.3	1.3e-15	36	128	2	86
trihelix 2 WtkqevlaLiearremeerlr...rgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + L++a+ e+ l+ r+ l ++We+v +++ r+ g ++s +qCk+k+enl+kryk++ + ++ ++ss++p+f+++e 462960139 36 WSEEAICSLLDAYIERLGGLGqliRKYLTRQDWEDVTAAVtkqhraRDAGGSKSVEQCKNKIENLKKRYKAECTKIADG-RRASSNWPWFKKME 128 ************9999999444588**************999******************988888887.57778******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-15	34	128	No hit	No description
Gene3D	G3DSA:3.40.1160.10	3.3E-21	156	240	IPR001048	Aspartate/glutamate/uridylate kinase
SuperFamily	SSF53633	1.38E-14	161	240	IPR001048	Aspartate/glutamate/uridylate kinase

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MLASTAPTST VGNKKGRGRG GASSPRAEFL DNREGWSEEA ICSLLDAYIE RLGGLGQLIR 60 KYLTRQDWED VTAAVTKQHR ARDAGGSKSV EQCKNKIENL KKRYKAECTK IADGRRASSN 120 WPWFKKMELI LGTTGDIASP NPAFSTSDEK PRLQQEQNNE RMMASVMNAV LLKASLAQIG 180 IETRVQTSLM MQDATEPYIR RQAIRHLEKG RVVIFGGTGT SMGNPLFTTD TAAALRASEI 240 VPFDMLEPGN ISRALCGDQR PEVVMYNSCA P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a7w_A	4e-23	162	240	80	155	URIDYLATE KINASE
4a7w_B	4e-23	162	240	80	155	URIDYLATE KINASE
4a7x_A	4e-23	162	240	80	155	URIDYLATE KINASE
4a7x_B	4e-23	162	240	80	155	URIDYLATE KINASE
4a7x_C	4e-23	162	240	80	155	URIDYLATE KINASE
4a7x_D	4e-23	162	240	80	155	URIDYLATE KINASE
4a7x_E	4e-23	162	240	80	155	URIDYLATE KINASE
4a7x_F	4e-23	162	240	80	155	URIDYLATE KINASE
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462960139

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016541056.1	9e-59	PREDICTED: uridylate kinase
TrEMBL	A0A1U8E3R3	2e-57	A0A1U8E3R3_CAPAN; uridylate kinase
STRING	OMERI04G08980.1	2e-47	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50460	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	1e-26	Trihelix family protein