PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959703
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 625aa    MW: 67369.6 Da    PI: 8.0256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959703genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.83e-06426451227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C+ f     Ck G++C+FaHg+
  462959703 426 KTRMCNKFNTAEGCKWGSKCHFAHGE 451
                89**********************96 PP
2zf-CCCH34.92.5e-11591616127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC++f + G C +G+rC+FaHg+
  462959703 591 FKTKLCDNFNK-GSCTFGERCHFAHGE 616
                69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF147362.2E-8453346IPR026750Protein N-terminal asparagine amidohydrolase
PROSITE profilePS501037.817359386IPR000571Zinc finger, CCCH-type
SMARTSM0035644362385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-14421456IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-7423455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821424452IPR000571Zinc finger, CCCH-type
SMARTSM003560.82424451IPR000571Zinc finger, CCCH-type
SMARTSM003222.8E-8495565IPR004087K Homology domain
PROSITE profilePS5008414.236496560IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.5E-13499564IPR004088K Homology domain, type 1
CDDcd001052.42E-11500560No hitNo description
SuperFamilySSF547913.8E-13500591IPR004088K Homology domain, type 1
PfamPF000131.0E-9500561IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.9E-16588622IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-8590621IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286590617IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7590616IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9591616IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008418Molecular Functionprotein-N-terminal asparagine amidohydrolase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MLLVDGEPVL SSSAGAGASG RELVAALAGS PSLRDAADRL KAAPERRIPA GEEGARRHVY  60
VFQREYATVD PARVELVGTD EATTCVGVVV RNNKTGMTSV SHMDFPRIVE GGLKQMLELL  120
GDDNEPFDVH LIGGFDDAST KVVHSSGKKH IKQDGYSYPL CCKIAEVLHK SHRQFNLRSF  180
CVLENNTTTD SFGNAKPVIG GFVVSDFLSS AFVTALVETL SGVVTPACFD MNSRCPDEVV  240
RRIRVSVSSY DPVWQGKLLE TYDTQCDVFR IAPACWMPNW SDIASSLNQL SDSEVLLQCS  300
TSPAAEPPHF VENERRIWKY LIDNPDWEET FPKYKPRVFH RTNDGKRRKT SPSMIGTAQP  360
GRDLVAQHRT AGCPFGASCH FLHNFPGGYQ AVAKMTNLGG PPVPSPMGRM PMGPGVPDGP  420
PTPSVKTRMC NKFNTAEGCK WGSKCHFAHG ERELGKPMPM DNTMGGPPMG PGHNGHFMPP  480
PMPIPDMVPP STFGASAAAK ISVDASLAGG IIGKGGTNTK HISRVTGAKL AIRDNEADPN  540
LKNIELEGTF DQIKHASAMV TELIVRIGGK VPQQAKNPGR GSHAGGPGSN FKTKLCDNFN  600
KGSCTFGERC HFAHGEGELR KPAAV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959703
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810910.10.0protein N-terminal asparagine amidohydrolase isoform X1
TrEMBLA0A3L6PHF40.0A0A3L6PHF4_PANMI; Uncharacterized protein
STRINGLPERR06G17640.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1034022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-40C3H family protein