PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959601
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 457aa    MW: 54657.1 Da    PI: 3.6183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959601genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+v++ + +G++ W++Iar+++ gRt++++k++w++
        462959601  67 RGSITSEEHDLIVRLQAAWGNR-WSRIARHLP-GRTDNDVKNYWRT 110
                      7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.2591261IPR017877Myb-like domain
SuperFamilySSF466891.99E-2015108IPR009057Homeodomain-like
SMARTSM007170.661663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-101868IPR009057Homeodomain-like
PROSITE profilePS5129425.27262116IPR017930Myb domain
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
PfamPF002491.9E-1367110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2169115IPR009057Homeodomain-like
CDDcd001671.31E-971110No hitNo description
Gene3DG3DSA:1.10.10.601.4E-5291331IPR009057Homeodomain-like
PROSITE profilePS500904.797296341IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MQSAAAAMDD GEPAVRKGPW TLVEDLLLVN YINAHGEGAW NILARGAAHR EELPAAWLNY  60
LNPNVRRGSI TSEEHDLIVR LQAAWGNRWS RIARHLPGRT DNDVKNYWRT RIHKKQRKQD  120
CATKRTEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE  180
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEED VHAICCCCHG  240
RRGAGGAQGP LDVGGGPPPR QLHQRPRRGS LEHPRPRRRA EAHREELPAA WLNYLNPNVR  300
RGSITSEEHD LIVRLQAAWG NRHTHVPWTT LLKATKRTEE EEEEEEEEEE EEEEEEEEEE  360
EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE  420
EEEEDQEVVV AMAPWASLQD SCQCWVKTSG PLRISGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-15111151107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959601
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-41myb domain protein 21