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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462959421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | GRAS | ||||||||
Protein Properties | Length: 225aa MW: 26729.6 Da PI: 9.0044 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 192 | 3.9e-59 | 8 | 216 | 155 | 364 |
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 +e++e+tg+rL+++A+ l+vpfe+++ +a +++++++e+L+++++E l+Vn+ +++ +++de+v+ +s+r++vL+++ +++P+++++ + +n++ F+ 462959421 8 AERIEATGRRLHEYARMLNVPFEYRA-IAAKWDTIQVEDLKINSDEFLVVNCLFRMRNMMDETVTDDSPRTRVLNTISKMNPHLFIHGVVNGTYNAPFFV 106 6899**********************.799********************************************************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 +rf eal ++s+lfd+le++ +r++e r +Er + gre+ nv+aceg+er+er et+++W+ r +aGF+++pl+e+++k a++ ++k + + + v+e+ 462959421 107 TRFKEALFHFSSLFDMLEVNTSRTDELRLLIERDFYGREALNVIACEGTERIERPETYKQWKLRNLRAGFRQLPLDEDIMKRARYKVSKSYHRDFLVDED 206 *******************************************************************************************999****** PP GRAS 355 sgslvlgWkd 364 ++++++gWk+ 462959421 207 NKWMLQGWKG 216 ********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.083 | 1 | 206 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-56 | 8 | 216 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVPGFRPAER IEATGRRLHE YARMLNVPFE YRAIAAKWDT IQVEDLKINS DEFLVVNCLF 60 RMRNMMDETV TDDSPRTRVL NTISKMNPHL FIHGVVNGTY NAPFFVTRFK EALFHFSSLF 120 DMLEVNTSRT DELRLLIERD FYGREALNVI ACEGTERIER PETYKQWKLR NLRAGFRQLP 180 LDEDIMKRAR YKVSKSYHRD FLVDEDNKWM LQGWKGPFSS YQRGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-16 | 9 | 215 | 170 | 368 | Protein SCARECROW |
5b3h_A | 8e-16 | 9 | 215 | 169 | 367 | Protein SCARECROW |
5b3h_D | 8e-16 | 9 | 215 | 169 | 367 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462959421 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981240.1 | 1e-139 | scarecrow-like protein 30 | ||||
Refseq | XP_022678638.1 | 1e-139 | scarecrow-like protein 30 | ||||
Swissprot | O80933 | 2e-97 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A0A9TYC8 | 1e-142 | A0A0A9TYC8_ARUDO; Uncharacterized protein | ||||
STRING | Si034627m | 1e-139 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13841 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-99 | GRAS family protein |