PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

462959009

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bHLH

Protein Properties

Length: 254aa MW: 27929.9 Da PI: 7.9773

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462959009	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.1e-13	81	128	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++ErrRR+++ + f L +++P + +K +K++iL +++Y+k+L+ 462959009 81 QEHVIAERRRREKMQQQFVALATIVPDL-----TKTDKISILGSTIKYVKQLE 128 5799*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.799	78	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-10	81	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-15	82	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-17	82	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.28E-11	83	132	No hit	No description
SMART	SM00353	1.4E-12	84	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MAPPLPNPFH PPSRSRSFGG PSFGEMTVKT EPGQPSSSTS ILSFGAQPPR TLSFSAGDWP 60 DGIEAVQQAP ERRSRAHLNT QEHVIAERRR REKMQQQFVA LATIVPDLTK TDKISILGST 120 IKYVKQLEEK VKALEEQSAP RTSEPAVFER KCRISSDNDD AGTSSGAISG YIPNVEASIH 180 GDTVLLKICC KERRGVLVMV FSELENHGLT IINTSALPYT DSCLSVTVTA KARPFVLQML 240 FIQLVLSYVL TFQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	ERRRRE
2	87	92	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462959009

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685524.1	4e-98	transcription factor NAI1
Refseq	XP_025798093.1	1e-100	transcription factor bHLH18-like
TrEMBL	A0A3L6SAV4	1e-110	A0A3L6SAV4_PANMI; Uncharacterized protein
STRING	OB03G19470.1	2e-88	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-34	bHLH family protein