PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958633
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 488aa    MW: 53447 Da    PI: 8.5423
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958633genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08102125427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                + C f++r+  Ck+G+ C F H++
  462958633 102 KVCAFYMRSRACKFGEDCIFDHPQ 125
                68********************97 PP
2zf-CCCH28.52.6e-09149175127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+ff++tG+Ck+ ++CkF+H++
  462958633 149 PGEPNCPFFRKTGECKFKSKCKFNHPK 175
                5789*********************96 PP
3zf-CCCH30.75.2e-10189208827
                GGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                f+a+tG Ck+G++CkF+H++
  462958633 189 FYAKTGKCKFGATCKFNHPK 208
                9*****************96 PP
4zf-CCCH291.9e-09264287326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +  C+f+++tG C yG  C+++H+
  462958633 264 EIDCSFYMKTGSCMYGTVCRYNHP 287
                568********************9 PP
5zf-CCCH38.91.4e-12348372226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++  C+f+++tG+Cky ++CkF+H+
  462958633 348 GETVCDFYMKTGYCKYSEKCKFHHP 372
                6789********************8 PP
6zf-CCCH38.42.1e-12404427427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                e C f++r+GtCk+G +CkF H+p
  462958633 404 EVCAFYMRSGTCKFGVQCKFDHPP 427
                89********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.50298126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-598125IPR000571Zinc finger, CCCH-type
SMARTSM003560.02898125IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6102125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835148176IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-4148175IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7150175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5153178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.615181209IPR000571Zinc finger, CCCH-type
SMARTSM003560.37185208IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7189208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4189210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.699261289IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5261288IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6264287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5266289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69346374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7346375IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-7346373IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10348372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6351372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122400428IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-7400427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5403427IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10404427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5404425IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSDPFYPRRL PGRGLRSGDY EVDLIAARYA DVPLPSLSPA EVGYFDAHVG ARRSAEVLYH  60
HSVMGSHSTF GQSEPLYSSN TMVKRPRLES GLTIYPQRPG GKVCAFYMRS RACKFGEDCI  120
FDHPQWVPEG GIPNWREVQN IDDSYPERPG EPNCPFFRKT GECKFKSKCK FNHPKGKVNE  180
FKGVADNEFY AKTGKCKFGA TCKFNHPKDD KVPTLTGKQT IYTAAIDEEV FNGAADGSNP  240
AKTDKPTAAA EAHNAKGLPI RPGEIDCSFY MKTGSCMYGT VCRYNHPDRQ VVDTALMTSL  300
TQGILPTPAP AAPAAVLNPV ATFLPGFDIQ AALMPLEPEP VAYPQRPGET VCDFYMKTGY  360
CKYSEKCKFH HPIDRSAPRP NESWDPQQTV TITLAGLPRR EGAEVCAFYM RSGTCKFGVQ  420
CKFDHPPPAE AITKLQAAGG KKNAKKAKAV AKLMAAAEKK TEGLSIGLAE AEPSQKKAEG  480
LSIVLAQP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815023.10.0zinc finger CCCH domain-containing protein 8-like isoform X3
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0A9D1N20.0A0A0A9D1N2_ARUDO; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
STRINGSb03g027910.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-120floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]